Control track and group visibility more selectively below.
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| Broad Histone |
| Histone Modifications by ChIP-seq from REMC/Broad |
| UCSD Histone |
| Histone Modifications by ChIP-seq from REMC/UCSD |
| UCSF-UBC-USC Histone |
| Histone Modification by Chip-seq Signal from REMC/UCSF-UBC-USC |
| DNase |
| DNase Hypersensitivity Raw Signal from REMC/UW |
| Footprinting |
| Genomic Footprinting from REMC/UW |
| RNA |
| RNA-seq Signal from REMC |
| DNA Methylation |
| DNA Methylation from REMC |
| By Assay |
| Roadmap data by assay |
| smRNA-Seq |
| smRNA-Seq tracks for 15 sample type(s) |
| RRBS |
| RRBS tracks for 70 sample type(s) |
| mRNA-Seq |
| mRNA-Seq tracks for 80 sample type(s) |
| MRE-Seq |
| MRE-Seq tracks for 18 sample type(s) |
| MeDIP-Seq |
| MeDIP-Seq tracks for 19 sample type(s) |
| Input |
| Input tracks for 138 sample type(s) |
| H4K91ac |
| H4K91ac tracks for 6 sample type(s) |
| H4K8ac |
| H4K8ac tracks for 7 sample type(s) |
| H4K5ac |
| H4K5ac tracks for 3 sample type(s) |
| H4K20me1 |
| H4K20me1 tracks for 3 sample type(s) |
| H4K12ac |
| H4K12ac tracks for 1 sample type(s) |
| H3T11ph |
| H3T11ph tracks for 1 sample type(s) |
| H3K9me3 |
| H3K9me3 tracks for 127 sample type(s) |
| H3K9me1 |
| H3K9me1 tracks for 1 sample type(s) |
| H3K9ac |
| H3K9ac tracks for 49 sample type(s) |
| H3K79me2 |
| H3K79me2 tracks for 5 sample type(s) |
| H3K79me1 |
| H3K79me1 tracks for 7 sample type(s) |
| H3K56ac |
| H3K56ac tracks for 3 sample type(s) |
| H3K4me3 |
| H3K4me3 tracks for 120 sample type(s) |
| H3K4me2 |
| H3K4me2 tracks for 8 sample type(s) |
| H3K4me1 |
| H3K4me1 tracks for 125 sample type(s) |
| H3K4ac |
| H3K4ac tracks for 8 sample type(s) |
| H3K36me3 |
| H3K36me3 tracks for 130 sample type(s) |
| H3K27me3 |
| H3K27me3 tracks for 125 sample type(s) |
| H3K27ac |
| H3K27ac tracks for 96 sample type(s) |
| H3K23me2 |
| H3K23me2 tracks for 2 sample type(s) |
| H3K23ac |
| H3K23ac tracks for 8 sample type(s) |
| H3K18ac |
| H3K18ac tracks for 8 sample type(s) |
| H3K14ac |
| H3K14ac tracks for 6 sample type(s) |
| H2BK5ac |
| H2BK5ac tracks for 7 sample type(s) |
| H2BK20ac |
| H2BK20ac tracks for 3 sample type(s) |
| H2BK15ac |
| H2BK15ac tracks for 5 sample type(s) |
| H2BK12ac |
| H2BK12ac tracks for 6 sample type(s) |
| H2BK120ac |
| H2BK120ac tracks for 7 sample type(s) |
| H2AK9ac |
| H2AK9ac tracks for 1 sample type(s) |
| H2AK5ac |
| H2AK5ac tracks for 7 sample type(s) |
| H2A.Z |
| H2A.Z tracks for 7 sample type(s) |
| DGF |
| DGF tracks for 21 sample type(s) |
| ChromatinAccessibility |
| ChromatinAccessibility tracks for 89 sample type(s) |
| Bisulfite-Seq |
| Bisulfite-Seq tracks for 48 sample type(s) |
| By Sample |
| Roadmap data by sample |
| UCSF-4star |
| UCSF-4star tracks for 8 assay type(s) |
| UCSF-4Star |
| UCSF-4Star tracks for 6 assay type(s) |
| Treg Primary Cells |
| Treg Primary Cells tracks for 5 assay type(s) |
| Thymus |
| Thymus tracks for 7 assay type(s) |
| Th17 Primary Cells |
| Th17 Primary Cells tracks for 2 assay type(s) |
| Testis Spermatozoa Primary Cells |
| Testis Spermatozoa Primary Cells tracks for 1 assay type(s) |
| Stomach Smooth Muscle |
| Stomach Smooth Muscle tracks for 9 assay type(s) |
| Stomach Mucosa |
| Stomach Mucosa tracks for 8 assay type(s) |
| Stomach Mucosa |
| Stomach Mucosa tracks for 7 assay type(s) |
| Spleen |
| Spleen tracks for 9 assay type(s) |
| Small Intestine |
| Small Intestine tracks for 10 assay type(s) |
| Skeletal Muscle |
| Skeletal Muscle tracks for 2 assay type(s) |
| Sigmoid Colon |
| Sigmoid Colon tracks for 9 assay type(s) |
| Right Ventricle |
| Right Ventricle tracks for 8 assay type(s) |
| Right Atrium |
| Right Atrium tracks for 7 assay type(s) |
| Rectal Smooth Muscle |
| Rectal Smooth Muscle tracks for 9 assay type(s) |
| Rectal Mucosa |
| Rectal Mucosa tracks for 9 assay type(s) |
| Psoas Muscle |
| Psoas Muscle tracks for 9 assay type(s) |
| Primary Fibroblast |
| Primary Fibroblast tracks for 1 assay type(s) |
| Placenta Villi |
| Placenta Villi tracks for 1 assay type(s) |
| Placenta Trophoblast Primary Cells |
| Placenta Trophoblast Primary Cells tracks for 1 assay type(s) |
| Placenta Chorion Smooth |
| Placenta Chorion Smooth tracks for 7 assay type(s) |
| Placenta Basal Plate |
| Placenta Basal Plate tracks for 1 assay type(s) |
| Placenta Amnion |
| Placenta Amnion tracks for 8 assay type(s) |
| Peripheral Blood Mononuclear Primary Cells |
| Peripheral Blood Mononuclear Primary Cells tracks for 9 assay type(s) |
| Peripheral Blood Mononuclear Primary Cells |
| Peripheral Blood Mononuclear Primary Cells tracks for 8 assay type(s) |
| Penis Foreskin Melanocyte Primary Cells |
| Penis Foreskin Melanocyte Primary Cells tracks for 13 assay type(s) |
| Penis Foreskin Keratinocyte Primary Cells |
| Penis Foreskin Keratinocyte Primary Cells tracks for 15 assay type(s) |
| Penis Foreskin Fibroblast Primary Cells |
| Penis Foreskin Fibroblast Primary Cells tracks for 14 assay type(s) |
| Pancreatic Islets |
| Pancreatic Islets tracks for 10 assay type(s) |
| Pancreas |
| Pancreas tracks for 10 assay type(s) |
| Ovary |
| Ovary tracks for 8 assay type(s) |
| Neurosphere Cultured Cells Ganglionic Eminence Derived |
| Neurosphere Cultured Cells Ganglionic Eminence Derived tracks for 12 assay type(s) |
| Neurosphere Cultured Cells Cortex Derived |
| Neurosphere Cultured Cells Cortex Derived tracks for 11 assay type(s) |
| Muscle Satellite Cultured Cells |
| Muscle Satellite Cultured Cells tracks for 8 assay type(s) |
| Mobilized CD8 Primary Cells |
| Mobilized CD8 Primary Cells tracks for 1 assay type(s) |
| Mobilized CD4 Primary Cells |
| Mobilized CD4 Primary Cells tracks for 2 assay type(s) |
| Mobilized CD34 Primary Cells |
| Mobilized CD34 Primary Cells tracks for 2 assay type(s) |
| Mobilized CD3 Primary Cells |
| Mobilized CD3 Primary Cells tracks for 1 assay type(s) |
| Mobiled CD34 |
| Mobiled CD34 tracks for 10 assay type(s) |
| Mesenchymal Stem Cell Derived Adipocyte Cultured Cells |
| Mesenchymal Stem Cell Derived Adipocyte Cultured Cells tracks for 7 assay type(s) |
| Lung |
| Lung tracks for 8 assay type(s) |
| Left Ventricle |
| Left Ventricle tracks for 9 assay type(s) |
| iPS27e |
| iPS27e tracks for 1 assay type(s) |
| iPS27b |
| iPS27b tracks for 1 assay type(s) |
| iPS20b |
| iPS20b tracks for 9 assay type(s) |
| iPS18c |
| iPS18c tracks for 7 assay type(s) |
| iPS18b |
| iPS18b tracks for 2 assay type(s) |
| iPS18a |
| iPS18a tracks for 9 assay type(s) |
| iPS17b |
| iPS17b tracks for 1 assay type(s) |
| iPS17a |
| iPS17a tracks for 1 assay type(s) |
| iPS15b |
| iPS15b tracks for 8 assay type(s) |
| iPS11c |
| iPS11c tracks for 1 assay type(s) |
| iPS11b |
| iPS11b tracks for 1 assay type(s) |
| iPS11a |
| iPS11a tracks for 3 assay type(s) |
| iPS-DF.6.9 |
| iPS-DF.6.9 tracks for 1 assay type(s) |
| iPS-DF.6.9 |
| iPS-DF.6.9 tracks for 1 assay type(s) |
| iPS-DF.19.11 |
| iPS-DF.19.11 tracks for 1 assay type(s) |
| iPS-DF.19.11 |
| iPS-DF.19.11 tracks for 1 assay type(s) |
| iPS DF 6.9 |
| iPS DF 6.9 tracks for 8 assay type(s) |
| iPS DF 4.7 |
| iPS DF 4.7 tracks for 1 assay type(s) |
| iPS DF 19.7 |
| iPS DF 19.7 tracks for 1 assay type(s) |
| iPS DF 19.11 |
| iPS DF 19.11 tracks for 8 assay type(s) |
| iPS DF 19 |
| iPS DF 19 tracks for 1 assay type(s) |
| IMR90 |
| IMR90 tracks for 33 assay type(s) |
| HUES9 |
| HUES9 tracks for 1 assay type(s) |
| HUES8 |
| HUES8 tracks for 1 assay type(s) |
| HUES66 |
| HUES66 tracks for 1 assay type(s) |
| HUES65 |
| HUES65 tracks for 1 assay type(s) |
| HUES64 |
| HUES64 tracks for 11 assay type(s) |
| HUES63 |
| HUES63 tracks for 1 assay type(s) |
| HUES62 |
| HUES62 tracks for 1 assay type(s) |
| HUES6 Derived Embryoid Body Cultured Cells |
| HUES6 Derived Embryoid Body Cultured Cells tracks for 1 assay type(s) |
| HUES6 |
| HUES6 tracks for 9 assay type(s) |
| HUES53 |
| HUES53 tracks for 1 assay type(s) |
| HUES49 |
| HUES49 tracks for 1 assay type(s) |
| HUES48 |
| HUES48 tracks for 9 assay type(s) |
| HUES45 Derived Embryoid Body Cultured Cells |
| HUES45 Derived Embryoid Body Cultured Cells tracks for 1 assay type(s) |
| HUES45 |
| HUES45 tracks for 1 assay type(s) |
| HUES44 |
| HUES44 tracks for 1 assay type(s) |
| HUES3 Derived Embryoid Body Cultured Cells |
| HUES3 Derived Embryoid Body Cultured Cells tracks for 1 assay type(s) |
| HUES3 |
| HUES3 tracks for 1 assay type(s) |
| HUES28 |
| HUES28 tracks for 1 assay type(s) |
| HUES13 |
| HUES13 tracks for 1 assay type(s) |
| HUES1 Derived Embryoid Body Cultured Cells |
| HUES1 Derived Embryoid Body Cultured Cells tracks for 1 assay type(s) |
| HUES1 |
| HUES1 tracks for 1 assay type(s) |
| hESC Derived CD56+ Mesoderm Cultured Cells |
| hESC Derived CD56+ Mesoderm Cultured Cells tracks for 9 assay type(s) |
| hESC Derived CD56+ Ectoderm Cultured Cells |
| hESC Derived CD56+ Ectoderm Cultured Cells tracks for 9 assay type(s) |
| hESC Derived CD184+ Endoderm Cultured Cells |
| hESC Derived CD184+ Endoderm Cultured Cells tracks for 10 assay type(s) |
| hESC Derived CD184 Endoderm Cultured Cells |
| hESC Derived CD184 Endoderm Cultured Cells tracks for 1 assay type(s) |
| Heart |
| Heart tracks for 1 assay type(s) |
| H9 Derived Neuronal Progenitor Cultured Cells |
| H9 Derived Neuronal Progenitor Cultured Cells tracks for 7 assay type(s) |
| H9 Derived Neuronal Progenitor Cultured Cells |
| H9 Derived Neuronal Progenitor Cultured Cells tracks for 1 assay type(s) |
| H9 Derived Neuron Cultured Cells |
| H9 Derived Neuron Cultured Cells tracks for 1 assay type(s) |
| H9 Derived Neuron Cultured Cells |
| H9 Derived Neuron Cultured Cells tracks for 6 assay type(s) |
| H9 Derived Neuron Cultured Cells |
| H9 Derived Neuron Cultured Cells tracks for 1 assay type(s) |
| H9 Derived Embryoid Body Cultured Cells |
| H9 Derived Embryoid Body Cultured Cells tracks for 1 assay type(s) |
| H9 Cell line |
| H9 Cell line tracks for 32 assay type(s) |
| H1Es |
| H1Es tracks for 34 assay type(s) |
| H1-BMP4 |
| H1-BMP4 tracks for 2 assay type(s) |
| H1 Derived Neuronal Progenitor Cultured Cells r2b |
| H1 Derived Neuronal Progenitor Cultured Cells r2b tracks for 1 assay type(s) |
| H1 Derived Neuronal Progenitor Cultured Cells r2a |
| H1 Derived Neuronal Progenitor Cultured Cells r2a tracks for 1 assay type(s) |
| H1 Derived Neuronal Progenitor Cultured Cells r1c |
| H1 Derived Neuronal Progenitor Cultured Cells r1c tracks for 1 assay type(s) |
| H1 Derived Neuronal Progenitor Cultured Cells r1b |
| H1 Derived Neuronal Progenitor Cultured Cells r1b tracks for 1 assay type(s) |
| H1 Derived Neuronal Progenitor Cultured Cells r1a |
| H1 Derived Neuronal Progenitor Cultured Cells r1a tracks for 1 assay type(s) |
| H1 Derived Neuronal Progenitor Cultured Cells |
| H1 Derived Neuronal Progenitor Cultured Cells tracks for 2 assay type(s) |
| H1 Derived Neuronal Progenitor Cultured Cells |
| H1 Derived Neuronal Progenitor Cultured Cells tracks for 23 assay type(s) |
| H1 Derived Neuronal Progenitor Cultured Cells |
| H1 Derived Neuronal Progenitor Cultured Cells tracks for 1 assay type(s) |
| H1 Derived Mesenchymal Stem Cells |
| H1 Derived Mesenchymal Stem Cells tracks for 25 assay type(s) |
| H1 Derived Embryoid Body Cultured Cells |
| H1 Derived Embryoid Body Cultured Cells tracks for 1 assay type(s) |
| H1 BMP4 Derived Trophoblast Cultured Cells |
| H1 BMP4 Derived Trophoblast Cultured Cells tracks for 26 assay type(s) |
| H1 BMP4 Derived Trophoblast Cultured Cells |
| H1 BMP4 Derived Trophoblast Cultured Cells tracks for 2 assay type(s) |
| H1 BMP4 Derived Mesendoderm Cultured Cells |
| H1 BMP4 Derived Mesendoderm Cultured Cells tracks for 1 assay type(s) |
| H1 BMP4 Derived Mesendoderm Cultured Cells |
| H1 BMP4 Derived Mesendoderm Cultured Cells tracks for 5 assay type(s) |
| H1 BMP4 Derived Mesendoderm Cultured Cells |
| H1 BMP4 Derived Mesendoderm Cultured Cells tracks for 18 assay type(s) |
| Gastric |
| Gastric tracks for 10 assay type(s) |
| Fibroblasts Fetal Skin Upper Back |
| Fibroblasts Fetal Skin Upper Back tracks for 1 assay type(s) |
| Fibroblasts Fetal Skin Scalp |
| Fibroblasts Fetal Skin Scalp tracks for 2 assay type(s) |
| Fibroblasts Fetal Skin Quadriceps Right |
| Fibroblasts Fetal Skin Quadriceps Right tracks for 1 assay type(s) |
| Fibroblasts Fetal Skin Quadriceps Left |
| Fibroblasts Fetal Skin Quadriceps Left tracks for 1 assay type(s) |
| Fibroblasts Fetal Skin Biceps Right |
| Fibroblasts Fetal Skin Biceps Right tracks for 1 assay type(s) |
| Fibroblasts Fetal Skin Biceps Left |
| Fibroblasts Fetal Skin Biceps Left tracks for 1 assay type(s) |
| Fibroblasts Fetal Skin Back |
| Fibroblasts Fetal Skin Back tracks for 2 assay type(s) |
| Fibroblasts Fetal Skin Abdomen |
| Fibroblasts Fetal Skin Abdomen tracks for 2 assay type(s) |
| Fetal Thymus |
| Fetal Thymus tracks for 10 assay type(s) |
| Fetal Testes |
| Fetal Testes tracks for 1 assay type(s) |
| Fetal Stomach |
| Fetal Stomach tracks for 8 assay type(s) |
| Fetal Spleen |
| Fetal Spleen tracks for 1 assay type(s) |
| Fetal Spinal Cord |
| Fetal Spinal Cord tracks for 1 assay type(s) |
| Fetal Spinal Cord |
| Fetal Spinal Cord tracks for 2 assay type(s) |
| Fetal Skin |
| Fetal Skin tracks for 1 assay type(s) |
| Fetal Renal Pelvis Right |
| Fetal Renal Pelvis Right tracks for 1 assay type(s) |
| Fetal Renal Pelvis Left |
| Fetal Renal Pelvis Left tracks for 1 assay type(s) |
| Fetal Renal Pelvis |
| Fetal Renal Pelvis tracks for 1 assay type(s) |
| Fetal Renal Cortex Right |
| Fetal Renal Cortex Right tracks for 1 assay type(s) |
| Fetal Renal Cortex Left |
| Fetal Renal Cortex Left tracks for 1 assay type(s) |
| Fetal Renal Cortex |
| Fetal Renal Cortex tracks for 1 assay type(s) |
| Fetal Placenta |
| Fetal Placenta tracks for 8 assay type(s) |
| Fetal Ovary |
| Fetal Ovary tracks for 2 assay type(s) |
| Fetal Muscle Upper Trunk |
| Fetal Muscle Upper Trunk tracks for 1 assay type(s) |
| Fetal Muscle Upper Limb Skeletal |
| Fetal Muscle Upper Limb Skeletal tracks for 2 assay type(s) |
| Fetal Muscle Trunk |
| Fetal Muscle Trunk tracks for 9 assay type(s) |
| Fetal Muscle Lower Limb Skeletal |
| Fetal Muscle Lower Limb Skeletal tracks for 2 assay type(s) |
| Fetal Muscle Leg |
| Fetal Muscle Leg tracks for 10 assay type(s) |
| Fetal Muscle Back |
| Fetal Muscle Back tracks for 2 assay type(s) |
| Fetal Muscle Arm |
| Fetal Muscle Arm tracks for 3 assay type(s) |
| Fetal Lung Right |
| Fetal Lung Right tracks for 2 assay type(s) |
| Fetal Lung Left |
| Fetal Lung Left tracks for 2 assay type(s) |
| Fetal Lung |
| Fetal Lung tracks for 10 assay type(s) |
| Fetal Kidney Right |
| Fetal Kidney Right tracks for 1 assay type(s) |
| Fetal Kidney Left |
| Fetal Kidney Left tracks for 1 assay type(s) |
| Fetal Kidney |
| Fetal Kidney tracks for 9 assay type(s) |
| Fetal Intestine Small |
| Fetal Intestine Small tracks for 9 assay type(s) |
| Fetal Intestine Large |
| Fetal Intestine Large tracks for 9 assay type(s) |
| Fetal Heart |
| Fetal Heart tracks for 10 assay type(s) |
| Fetal Brain |
| Fetal Brain tracks for 14 assay type(s) |
| Fetal Adrenal Gland |
| Fetal Adrenal Gland tracks for 8 assay type(s) |
| Esophagus |
| Esophagus tracks for 9 assay type(s) |
| ES-WA7 |
| ES-WA7 tracks for 8 assay type(s) |
| ES-I3 |
| ES-I3 tracks for 8 assay type(s) |
| Duodenum Smooth Muscle |
| Duodenum Smooth Muscle tracks for 7 assay type(s) |
| Duodenum Mucosa |
| Duodenum Mucosa tracks for 9 assay type(s) |
| Colonic Mucosa |
| Colonic Mucosa tracks for 9 assay type(s) |
| Colon Smooth Muscle |
| Colon Smooth Muscle tracks for 9 assay type(s) |
| Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells |
| Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells tracks for 9 assay type(s) |
| CD8 Primary Cells |
| CD8 Primary Cells tracks for 7 assay type(s) |
| CD8 Naive Primary Cells |
| CD8 Naive Primary Cells tracks for 12 assay type(s) |
| CD8 Memory Primary Cells |
| CD8 Memory Primary Cells tracks for 7 assay type(s) |
| CD56 Primary Cells |
| CD56 Primary Cells tracks for 8 assay type(s) |
| CD4+ CD25int CD127+ Tmem Primary Cells |
| CD4+ CD25int CD127+ Tmem Primary Cells tracks for 7 assay type(s) |
| CD4+ CD25int CD127+ Tmem Primary Cells |
| CD4+ CD25int CD127+ Tmem Primary Cells tracks for 4 assay type(s) |
| CD4+ CD25int CD127 Tmem Primary Cells |
| CD4+ CD25int CD127 Tmem Primary Cells tracks for 3 assay type(s) |
| CD4+ CD25- Th Primary Cells |
| CD4+ CD25- Th Primary Cells tracks for 6 assay type(s) |
| CD4+ CD25- Th Primary Cells |
| CD4+ CD25- Th Primary Cells tracks for 7 assay type(s) |
| CD4+ CD25- IL17- PMA-Ionomycin stimulated MACS purified Th Primary Cells |
| CD4+ CD25- IL17- PMA-Ionomycin stimulated MACS purified Th Primary Cells tracks for 7 assay type(s) |
| CD4+ CD25- IL17- PMA-Ionomycin stimulated MACS purified Th Primary Cells |
| CD4+ CD25- IL17- PMA-Ionomycin stimulated MACS purified Th Primary Cells tracks for 7 assay type(s) |
| CD4+ CD25- IL17+ PMA-Ionomcyin stimulated Th17 Primary Cells |
| CD4+ CD25- IL17+ PMA-Ionomcyin stimulated Th17 Primary Cells tracks for 2 assay type(s) |
| CD4+ CD25- IL17+ PMA-Ionomcyin stimulated Th17 Primary Cells |
| CD4+ CD25- IL17+ PMA-Ionomcyin stimulated Th17 Primary Cells tracks for 6 assay type(s) |
| CD4+ CD25- IL17 PMA-Ionomcyin stimulated Th17 Primary Cells |
| CD4+ CD25- IL17 PMA-Ionomcyin stimulated Th17 Primary Cells tracks for 5 assay type(s) |
| CD4+ CD25- CD45RO+ Memory Primary Cells |
| CD4+ CD25- CD45RO+ Memory Primary Cells tracks for 6 assay type(s) |
| CD4+ CD25- CD45RO Memory Primary Cells |
| CD4+ CD25- CD45RO Memory Primary Cells tracks for 7 assay type(s) |
| CD4+ CD25- CD45RA+ Naive Primary Cells |
| CD4+ CD25- CD45RA+ Naive Primary Cells tracks for 6 assay type(s) |
| CD4+ CD25- CD45RA+ Naive Primary Cells |
| CD4+ CD25- CD45RA+ Naive Primary Cells tracks for 1 assay type(s) |
| CD4+ CD25- CD45RA Naive Primary Cells |
| CD4+ CD25- CD45RA Naive Primary Cells tracks for 6 assay type(s) |
| CD4+ CD25+ CD127- Treg Primary Cells |
| CD4+ CD25+ CD127- Treg Primary Cells tracks for 7 assay type(s) |
| CD4+ CD25+ CD127- Treg Primary Cells |
| CD4+ CD25+ CD127- Treg Primary Cells tracks for 6 assay type(s) |
| CD4 Primary Cells |
| CD4 Primary Cells tracks for 5 assay type(s) |
| CD4 Naive Primary Cells |
| CD4 Naive Primary Cells tracks for 11 assay type(s) |
| CD4 Memory Primary Cells |
| CD4 Memory Primary Cells tracks for 11 assay type(s) |
| CD34 Primary Cells |
| CD34 Primary Cells tracks for 7 assay type(s) |
| CD34 Cultured Cells |
| CD34 Cultured Cells tracks for 6 assay type(s) |
| CD3 Primary Cells |
| CD3 Primary Cells tracks for 10 assay type(s) |
| CD20 Primary Cells |
| CD20 Primary Cells tracks for 1 assay type(s) |
| CD19 Primary Cells |
| CD19 Primary Cells tracks for 9 assay type(s) |
| CD15 Primary Cells |
| CD15 Primary Cells tracks for 7 assay type(s) |
| CD14 Primary Cells |
| CD14 Primary Cells tracks for 8 assay type(s) |
| Breast vHMEC |
| Breast vHMEC tracks for 12 assay type(s) |
| Breast Stem Cells |
| Breast Stem Cells tracks for 5 assay type(s) |
| Breast Myoepithelial Cells |
| Breast Myoepithelial Cells tracks for 12 assay type(s) |
| Breast Luminal Epithelial Cells |
| Breast Luminal Epithelial Cells tracks for 10 assay type(s) |
| Breast Fibroblast Primary Cells |
| Breast Fibroblast Primary Cells tracks for 7 assay type(s) |
| Brain Substantia Nigra |
| Brain Substantia Nigra tracks for 9 assay type(s) |
| Brain Mid Frontal Lobe |
| Brain Mid Frontal Lobe tracks for 9 assay type(s) |
| Brain Inferior Temporal Lobe |
| Brain Inferior Temporal Lobe tracks for 9 assay type(s) |
| Brain Hippocampus Middle |
| Brain Hippocampus Middle tracks for 10 assay type(s) |
| Brain Germinal Matrix |
| Brain Germinal Matrix tracks for 10 assay type(s) |
| Brain Cingulate Gyrus |
| Brain Cingulate Gyrus tracks for 9 assay type(s) |
| Brain Cerebellum |
| Brain Cerebellum tracks for 1 assay type(s) |
| Brain Anterior Caudate |
| Brain Anterior Caudate tracks for 9 assay type(s) |
| Brain Angular Gyrus |
| Brain Angular Gyrus tracks for 9 assay type(s) |
| Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells |
| Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells tracks for 9 assay type(s) |
| Bladder |
| Bladder tracks for 5 assay type(s) |
| Aorta |
| Aorta tracks for 8 assay type(s) |
| Adult Liver |
| Adult Liver tracks for 10 assay type(s) |
| Adult Kidney |
| Adult Kidney tracks for 8 assay type(s) |
| Adrenal Gland |
| Adrenal Gland tracks for 7 assay type(s) |
| Adipose Tissue |
| Adipose Tissue tracks for 4 assay type(s) |
| Adipose Nuclei |
| Adipose Nuclei tracks for 8 assay type(s) |
| Adipose Derived Mesenchymal Stem Cell Cultured Cells |
| Adipose Derived Mesenchymal Stem Cell Cultured Cells tracks for 7 assay type(s) |
| Assay Summary |
| Assay Summary |
| smRNA-Seq Summary |
| Roadmap Epigenome smRNA-Seq Summary for 15 sample type(s) |
| RRBS Summary |
| Roadmap Epigenome RRBS Summary for 70 sample type(s) |
| mRNA-Seq Summary |
| Roadmap Epigenome mRNA-Seq Summary for 80 sample type(s) |
| MRE-Seq Summary |
| Roadmap Epigenome MRE-Seq Summary for 18 sample type(s) |
| MeDIP-Seq Summary |
| Roadmap Epigenome MeDIP-Seq Summary for 19 sample type(s) |
| Input Summary |
| Roadmap Epigenome Input Summary for 139 sample type(s) |
| H4K91ac Summary |
| Roadmap Epigenome H4K91ac Summary for 6 sample type(s) |
| H4K8ac Summary |
| Roadmap Epigenome H4K8ac Summary for 7 sample type(s) |
| H4K5ac Summary |
| Roadmap Epigenome H4K5ac Summary for 3 sample type(s) |
| H4K20me1 Summary |
| Roadmap Epigenome H4K20me1 Summary for 3 sample type(s) |
| H4K12ac Summary |
| Roadmap Epigenome H4K12ac Summary for 1 sample type(s) |
| H3T11ph Summary |
| Roadmap Epigenome H3T11ph Summary for 1 sample type(s) |
| H3K9me3 Summary |
| Roadmap Epigenome H3K9me3 Summary for 128 sample type(s) |
| H3K9me1 Summary |
| Roadmap Epigenome H3K9me1 Summary for 1 sample type(s) |
| H3K9ac Summary |
| Roadmap Epigenome H3K9ac Summary for 50 sample type(s) |
| H3K79me2 Summary |
| Roadmap Epigenome H3K79me2 Summary for 5 sample type(s) |
| H3K79me1 Summary |
| Roadmap Epigenome H3K79me1 Summary for 7 sample type(s) |
| H3K56ac Summary |
| Roadmap Epigenome H3K56ac Summary for 3 sample type(s) |
| H3K4me3 Summary |
| Roadmap Epigenome H3K4me3 Summary for 121 sample type(s) |
| H3K4me2 Summary |
| Roadmap Epigenome H3K4me2 Summary for 8 sample type(s) |
| H3K4me1 Summary |
| Roadmap Epigenome H3K4me1 Summary for 126 sample type(s) |
| H3K4ac Summary |
| Roadmap Epigenome H3K4ac Summary for 8 sample type(s) |
| H3K36me3 Summary |
| Roadmap Epigenome H3K36me3 Summary for 131 sample type(s) |
| H3K27me3 Summary |
| Roadmap Epigenome H3K27me3 Summary for 126 sample type(s) |
| H3K27ac Summary |
| Roadmap Epigenome H3K27ac Summary for 96 sample type(s) |
| H3K23me2 Summary |
| Roadmap Epigenome H3K23me2 Summary for 2 sample type(s) |
| H3K23ac Summary |
| Roadmap Epigenome H3K23ac Summary for 8 sample type(s) |
| H3K18ac Summary |
| Roadmap Epigenome H3K18ac Summary for 8 sample type(s) |
| H3K14ac Summary |
| Roadmap Epigenome H3K14ac Summary for 6 sample type(s) |
| H2BK5ac Summary |
| Roadmap Epigenome H2BK5ac Summary for 7 sample type(s) |
| H2BK20ac Summary |
| Roadmap Epigenome H2BK20ac Summary for 3 sample type(s) |
| H2BK15ac Summary |
| Roadmap Epigenome H2BK15ac Summary for 5 sample type(s) |
| H2BK12ac Summary |
| Roadmap Epigenome H2BK12ac Summary for 6 sample type(s) |
| H2BK120ac Summary |
| Roadmap Epigenome H2BK120ac Summary for 7 sample type(s) |
| H2AK9ac Summary |
| Roadmap Epigenome H2AK9ac Summary for 1 sample type(s) |
| H2AK5ac Summary |
| Roadmap Epigenome H2AK5ac Summary for 7 sample type(s) |
| H2A.Z Summary |
| Roadmap Epigenome H2A.Z Summary for 7 sample type(s) |
| DGF Summary |
| Roadmap Epigenome DGF Summary for 21 sample type(s) |
| ChromatinAccessibility Summary |
| Roadmap Epigenome ChromatinAccessibility Summary for 89 sample type(s) |
| Bisulfite-Seq Summary |
| Roadmap Epigenome Bisulfite-Seq Summary for 48 sample type(s) |
| Sample Summary |
| Sample Summary |
| UCSF-4star Summary |
| Roadmap Epigenome UCSF-4star Summary for 8 assay type(s) |
| UCSF-4Star Summary |
| Roadmap Epigenome UCSF-4Star Summary for 6 assay type(s) |
| Treg Primary Cells Summary |
| Roadmap Epigenome Treg Primary Cells Summary for 5 assay type(s) |
| Thymus Summary |
| Roadmap Epigenome Thymus Summary for 7 assay type(s) |
| Th17 Primary Cells Summary |
| Roadmap Epigenome Th17 Primary Cells Summary for 2 assay type(s) |
| Testis Spermatozoa Primary Cells Summary |
| Roadmap Epigenome Testis Spermatozoa Primary Cells Summary for 1 assay type(s) |
| Stomach Smooth Muscle Summary |
| Roadmap Epigenome Stomach Smooth Muscle Summary for 9 assay type(s) |
| Stomach Mucosa Summary |
| Roadmap Epigenome Stomach Mucosa Summary for 8 assay type(s) |
| StM Summary |
| Roadmap Epigenome StM Summary for 7 assay type(s) |
| Spleen Summary |
| Roadmap Epigenome Spleen Summary for 9 assay type(s) |
| Small Intestine Summary |
| Roadmap Epigenome Small Intestine Summary for 10 assay type(s) |
| Skeletal Muscle Summary |
| Roadmap Epigenome Skeletal Muscle Summary for 2 assay type(s) |
| Sigmoid Colon Summary |
| Roadmap Epigenome Sigmoid Colon Summary for 9 assay type(s) |
| Right Ventricle Summary |
| Roadmap Epigenome Right Ventricle Summary for 8 assay type(s) |
| Right Atrium Summary |
| Roadmap Epigenome Right Atrium Summary for 7 assay type(s) |
| Rectal Smooth Muscle Summary |
| Roadmap Epigenome Rectal Smooth Muscle Summary for 9 assay type(s) |
| Rectal Mucosa Summary |
| Roadmap Epigenome Rectal Mucosa Summary for 9 assay type(s) |
| Psoas Muscle Summary |
| Roadmap Epigenome Psoas Muscle Summary for 9 assay type(s) |
| Primary Fibroblast Summary |
| Roadmap Epigenome Primary Fibroblast Summary for 1 assay type(s) |
| Placenta Villi Summary |
| Roadmap Epigenome Placenta Villi Summary for 1 assay type(s) |
| Placenta Trophoblast Primary Cells Summary |
| Roadmap Epigenome Placenta Trophoblast Primary Cells Summary for 1 assay type(s) |
| Placenta Chorion Smooth Summary |
| Roadmap Epigenome Placenta Chorion Smooth Summary for 7 assay type(s) |
| Placenta Basal Plate Summary |
| Roadmap Epigenome Placenta Basal Plate Summary for 1 assay type(s) |
| Placenta Amnion Summary |
| Roadmap Epigenome Placenta Amnion Summary for 8 assay type(s) |
| PFKPC Summary |
| Roadmap Epigenome PFKPC Summary for 5 assay type(s) |
| Peripheral Blood Mononuclear Primary Cells Summary |
| Roadmap Epigenome Peripheral Blood Mononuclear Primary Cells Summary for 9 assay type(s) |
| PenisM Summary |
| Roadmap Epigenome PenisM Summary for 1 assay type(s) |
| PenisF Summary |
| Roadmap Epigenome PenisF Summary for 1 assay type(s) |
| Penis Foreskin Melanocyte Primary Cells Summary |
| Roadmap Epigenome Penis Foreskin Melanocyte Primary Cells Summary for 13 assay type(s) |
| Penis Foreskin Keratinocyte Primary Cells Summary |
| Roadmap Epigenome Penis Foreskin Keratinocyte Primary Cells Summary for 14 assay type(s) |
| Penis Foreskin Fibroblast Primary Cells Summary |
| Roadmap Epigenome Penis Foreskin Fibroblast Primary Cells Summary for 13 assay type(s) |
| PBM Summary |
| Roadmap Epigenome PBM Summary for 8 assay type(s) |
| Pancreatic Islets Summary |
| Roadmap Epigenome Pancreatic Islets Summary for 10 assay type(s) |
| Pancreas Summary |
| Roadmap Epigenome Pancreas Summary for 10 assay type(s) |
| Ovary Summary |
| Roadmap Epigenome Ovary Summary for 8 assay type(s) |
| Neurosphere Cultured Cells Ganglionic Eminence Derived Summary |
| Roadmap Epigenome Neurosphere Cultured Cells Ganglionic Eminence Derived Summary for 12 assay type(s) |
| Neurosphere Cultured Cells Cortex Derived Summary |
| Roadmap Epigenome Neurosphere Cultured Cells Cortex Derived Summary for 11 assay type(s) |
| Muscle Satellite Cultured Cells Summary |
| Roadmap Epigenome Muscle Satellite Cultured Cells Summary for 8 assay type(s) |
| Mobilized CD8 Primary Cells Summary |
| Roadmap Epigenome Mobilized CD8 Primary Cells Summary for 1 assay type(s) |
| Mobilized CD4 Primary Cells Summary |
| Roadmap Epigenome Mobilized CD4 Primary Cells Summary for 2 assay type(s) |
| Mobilized CD34 Primary Cells Summary |
| Roadmap Epigenome Mobilized CD34 Primary Cells Summary for 2 assay type(s) |
| Mobilized CD3 Primary Cells Summary |
| Roadmap Epigenome Mobilized CD3 Primary Cells Summary for 1 assay type(s) |
| Mobiled CD34 Summary |
| Roadmap Epigenome Mobiled CD34 Summary for 10 assay type(s) |
| Mesenchymal Stem Cell Derived Adipocyte Cultured Cells Summary |
| Roadmap Epigenome Mesenchymal Stem Cell Derived Adipocyte Cultured Cells Summary for 7 assay type(s) |
| Lung Summary |
| Roadmap Epigenome Lung Summary for 8 assay type(s) |
| Left Ventricle Summary |
| Roadmap Epigenome Left Ventricle Summary for 9 assay type(s) |
| iPS27e Summary |
| Roadmap Epigenome iPS27e Summary for 1 assay type(s) |
| iPS27b Summary |
| Roadmap Epigenome iPS27b Summary for 1 assay type(s) |
| iPS20b Summary |
| Roadmap Epigenome iPS20b Summary for 9 assay type(s) |
| iPS18c Summary |
| Roadmap Epigenome iPS18c Summary for 7 assay type(s) |
| iPS18b Summary |
| Roadmap Epigenome iPS18b Summary for 2 assay type(s) |
| iPS18a Summary |
| Roadmap Epigenome iPS18a Summary for 9 assay type(s) |
| iPS17b Summary |
| Roadmap Epigenome iPS17b Summary for 1 assay type(s) |
| iPS17a Summary |
| Roadmap Epigenome iPS17a Summary for 1 assay type(s) |
| iPS15b Summary |
| Roadmap Epigenome iPS15b Summary for 8 assay type(s) |
| iPS11c Summary |
| Roadmap Epigenome iPS11c Summary for 1 assay type(s) |
| iPS11b Summary |
| Roadmap Epigenome iPS11b Summary for 1 assay type(s) |
| iPS11a Summary |
| Roadmap Epigenome iPS11a Summary for 3 assay type(s) |
| iPS-DF.6.9 Summary |
| Roadmap Epigenome iPS-DF.6.9 Summary for 1 assay type(s) |
| iPS-DF.19.11 Summary |
| Roadmap Epigenome iPS-DF.19.11 Summary for 1 assay type(s) |
| iPS DF 6 9 Summary |
| Roadmap Epigenome iPS DF 6 9 Summary for 8 assay type(s) |
| iPS DF 4 7 Summary |
| Roadmap Epigenome iPS DF 4 7 Summary for 1 assay type(s) |
| iPS DF 19 Summary |
| Roadmap Epigenome iPS DF 19 Summary for 1 assay type(s) |
| iPS DF 19 7 Summary |
| Roadmap Epigenome iPS DF 19 7 Summary for 1 assay type(s) |
| iPS DF 19 11 Summary |
| Roadmap Epigenome iPS DF 19 11 Summary for 8 assay type(s) |
| IMR90 Summary |
| Roadmap Epigenome IMR90 Summary for 33 assay type(s) |
| HUES9 Summary |
| Roadmap Epigenome HUES9 Summary for 1 assay type(s) |
| HUES8 Summary |
| Roadmap Epigenome HUES8 Summary for 1 assay type(s) |
| HUES66 Summary |
| Roadmap Epigenome HUES66 Summary for 1 assay type(s) |
| HUES65 Summary |
| Roadmap Epigenome HUES65 Summary for 1 assay type(s) |
| HUES64 Summary |
| Roadmap Epigenome HUES64 Summary for 11 assay type(s) |
| HUES63 Summary |
| Roadmap Epigenome HUES63 Summary for 1 assay type(s) |
| HUES62 Summary |
| Roadmap Epigenome HUES62 Summary for 1 assay type(s) |
| HUES6 Summary |
| Roadmap Epigenome HUES6 Summary for 9 assay type(s) |
| HUES6 Derived Embryoid Body Cultured Cells Summary |
| Roadmap Epigenome HUES6 Derived Embryoid Body Cultured Cells Summary for 1 assay type(s) |
| HUES53 Summary |
| Roadmap Epigenome HUES53 Summary for 1 assay type(s) |
| HUES49 Summary |
| Roadmap Epigenome HUES49 Summary for 1 assay type(s) |
| HUES48 Summary |
| Roadmap Epigenome HUES48 Summary for 9 assay type(s) |
| HUES45 Summary |
| Roadmap Epigenome HUES45 Summary for 1 assay type(s) |
| HUES45 Derived Embryoid Body Cultured Cells Summary |
| Roadmap Epigenome HUES45 Derived Embryoid Body Cultured Cells Summary for 1 assay type(s) |
| HUES44 Summary |
| Roadmap Epigenome HUES44 Summary for 1 assay type(s) |
| HUES3 Summary |
| Roadmap Epigenome HUES3 Summary for 1 assay type(s) |
| HUES3 Derived Embryoid Body Cultured Cells Summary |
| Roadmap Epigenome HUES3 Derived Embryoid Body Cultured Cells Summary for 1 assay type(s) |
| HUES28 Summary |
| Roadmap Epigenome HUES28 Summary for 1 assay type(s) |
| HUES13 Summary |
| Roadmap Epigenome HUES13 Summary for 1 assay type(s) |
| HUES1 Summary |
| Roadmap Epigenome HUES1 Summary for 1 assay type(s) |
| HUES1 Derived Embryoid Body Cultured Cells Summary |
| Roadmap Epigenome HUES1 Derived Embryoid Body Cultured Cells Summary for 1 assay type(s) |
| hESC Derived CD56+ Mesoderm Cultured Cells Summary |
| Roadmap Epigenome hESC Derived CD56+ Mesoderm Cultured Cells Summary for 9 assay type(s) |
| hESC Derived CD56+ Ectoderm Cultured Cells Summary |
| Roadmap Epigenome hESC Derived CD56+ Ectoderm Cultured Cells Summary for 9 assay type(s) |
| hESC Derived CD184+ Endoderm Cultured Cells Summary |
| Roadmap Epigenome hESC Derived CD184+ Endoderm Cultured Cells Summary for 10 assay type(s) |
| hESC Derived CD184 Endoderm Cultured Cells Summary |
| Roadmap Epigenome hESC Derived CD184 Endoderm Cultured Cells Summary for 1 assay type(s) |
| Heart Summary |
| Roadmap Epigenome Heart Summary for 1 assay type(s) |
| HDNP Summary |
| Roadmap Epigenome HDNP Summary for 1 assay type(s) |
| HDN Summary |
| Roadmap Epigenome HDN Summary for 1 assay type(s) |
| H9 Derived Neuronal Progenitor Cultured Cells Summary |
| Roadmap Epigenome H9 Derived Neuronal Progenitor Cultured Cells Summary for 8 assay type(s) |
| H9 Derived Neuron Cultured Cells Summary |
| Roadmap Epigenome H9 Derived Neuron Cultured Cells Summary for 7 assay type(s) |
| H9 Derived Embryoid Body Cultured Cells Summary |
| Roadmap Epigenome H9 Derived Embryoid Body Cultured Cells Summary for 1 assay type(s) |
| H9 Cell line Summary |
| Roadmap Epigenome H9 Cell line Summary for 32 assay type(s) |
| H1Es Summary |
| Roadmap Epigenome H1Es Summary for 34 assay type(s) |
| H1DNP Summary |
| Roadmap Epigenome H1DNP Summary for 2 assay type(s) |
| H1-BMP4 Summary |
| Roadmap Epigenome H1-BMP4 Summary for 2 assay type(s) |
| H1 Derived Neuronal Progenitor Cultured Cells Summary |
| Roadmap Epigenome H1 Derived Neuronal Progenitor Cultured Cells Summary for 23 assay type(s) |
| H1 Derived Neuronal Progenitor Cultured Cells r2b Summary |
| Roadmap Epigenome H1 Derived Neuronal Progenitor Cultured Cells r2b Summary for 1 assay type(s) |
| H1 Derived Neuronal Progenitor Cultured Cells r2a Summary |
| Roadmap Epigenome H1 Derived Neuronal Progenitor Cultured Cells r2a Summary for 1 assay type(s) |
| H1 Derived Neuronal Progenitor Cultured Cells r1c Summary |
| Roadmap Epigenome H1 Derived Neuronal Progenitor Cultured Cells r1c Summary for 1 assay type(s) |
| H1 Derived Neuronal Progenitor Cultured Cells r1b Summary |
| Roadmap Epigenome H1 Derived Neuronal Progenitor Cultured Cells r1b Summary for 1 assay type(s) |
| H1 Derived Neuronal Progenitor Cultured Cells r1a Summary |
| Roadmap Epigenome H1 Derived Neuronal Progenitor Cultured Cells r1a Summary for 1 assay type(s) |
| H1 Derived Mesenchymal Stem Cells Summary |
| Roadmap Epigenome H1 Derived Mesenchymal Stem Cells Summary for 25 assay type(s) |
| H1 Derived Embryoid Body Cultured Cells Summary |
| Roadmap Epigenome H1 Derived Embryoid Body Cultured Cells Summary for 1 assay type(s) |
| H1 BMP4 Trophoblast Summary |
| Roadmap Epigenome H1 BMP4 Trophoblast Summary for 11 assay type(s) |
| H1 BMP4 Mesendoderm Summary |
| Roadmap Epigenome H1 BMP4 Mesendoderm Summary for 14 assay type(s) |
| H1 BMP4 Derived Trophoblast Cultured Cells Summary |
| Roadmap Epigenome H1 BMP4 Derived Trophoblast Cultured Cells Summary for 20 assay type(s) |
| H1 BMP4 Derived Mesendoderm Cultured Cells Summary |
| Roadmap Epigenome H1 BMP4 Derived Mesendoderm Cultured Cells Summary for 8 assay type(s) |
| Gastric Summary |
| Roadmap Epigenome Gastric Summary for 10 assay type(s) |
| Fibroblasts Fetal Skin Upper Back Summary |
| Roadmap Epigenome Fibroblasts Fetal Skin Upper Back Summary for 1 assay type(s) |
| Fibroblasts Fetal Skin Scalp Summary |
| Roadmap Epigenome Fibroblasts Fetal Skin Scalp Summary for 2 assay type(s) |
| Fibroblasts Fetal Skin Quadriceps Right Summary |
| Roadmap Epigenome Fibroblasts Fetal Skin Quadriceps Right Summary for 1 assay type(s) |
| Fibroblasts Fetal Skin Quadriceps Left Summary |
| Roadmap Epigenome Fibroblasts Fetal Skin Quadriceps Left Summary for 1 assay type(s) |
| Fibroblasts Fetal Skin Biceps Right Summary |
| Roadmap Epigenome Fibroblasts Fetal Skin Biceps Right Summary for 1 assay type(s) |
| Fibroblasts Fetal Skin Biceps Left Summary |
| Roadmap Epigenome Fibroblasts Fetal Skin Biceps Left Summary for 1 assay type(s) |
| Fibroblasts Fetal Skin Back Summary |
| Roadmap Epigenome Fibroblasts Fetal Skin Back Summary for 2 assay type(s) |
| Fibroblasts Fetal Skin Abdomen Summary |
| Roadmap Epigenome Fibroblasts Fetal Skin Abdomen Summary for 2 assay type(s) |
| Fetal Thymus Summary |
| Roadmap Epigenome Fetal Thymus Summary for 10 assay type(s) |
| Fetal Testes Summary |
| Roadmap Epigenome Fetal Testes Summary for 1 assay type(s) |
| Fetal Stomach Summary |
| Roadmap Epigenome Fetal Stomach Summary for 8 assay type(s) |
| Fetal Spleen Summary |
| Roadmap Epigenome Fetal Spleen Summary for 1 assay type(s) |
| Fetal Spinal Cord Summary |
| Roadmap Epigenome Fetal Spinal Cord Summary for 2 assay type(s) |
| Fetal Skin Summary |
| Roadmap Epigenome Fetal Skin Summary for 1 assay type(s) |
| Fetal Renal Pelvis Summary |
| Roadmap Epigenome Fetal Renal Pelvis Summary for 1 assay type(s) |
| Fetal Renal Pelvis Right Summary |
| Roadmap Epigenome Fetal Renal Pelvis Right Summary for 1 assay type(s) |
| Fetal Renal Pelvis Left Summary |
| Roadmap Epigenome Fetal Renal Pelvis Left Summary for 1 assay type(s) |
| Fetal Renal Cortex Summary |
| Roadmap Epigenome Fetal Renal Cortex Summary for 1 assay type(s) |
| Fetal Renal Cortex Right Summary |
| Roadmap Epigenome Fetal Renal Cortex Right Summary for 1 assay type(s) |
| Fetal Renal Cortex Left Summary |
| Roadmap Epigenome Fetal Renal Cortex Left Summary for 1 assay type(s) |
| Fetal Placenta Summary |
| Roadmap Epigenome Fetal Placenta Summary for 8 assay type(s) |
| Fetal Ovary Summary |
| Roadmap Epigenome Fetal Ovary Summary for 2 assay type(s) |
| Fetal Muscle Upper Trunk Summary |
| Roadmap Epigenome Fetal Muscle Upper Trunk Summary for 1 assay type(s) |
| Fetal Muscle Upper Limb Skeletal Summary |
| Roadmap Epigenome Fetal Muscle Upper Limb Skeletal Summary for 2 assay type(s) |
| Fetal Muscle Trunk Summary |
| Roadmap Epigenome Fetal Muscle Trunk Summary for 9 assay type(s) |
| Fetal Muscle Lower Limb Skeletal Summary |
| Roadmap Epigenome Fetal Muscle Lower Limb Skeletal Summary for 2 assay type(s) |
| Fetal Muscle Leg Summary |
| Roadmap Epigenome Fetal Muscle Leg Summary for 10 assay type(s) |
| Fetal Muscle Back Summary |
| Roadmap Epigenome Fetal Muscle Back Summary for 2 assay type(s) |
| Fetal Muscle Arm Summary |
| Roadmap Epigenome Fetal Muscle Arm Summary for 3 assay type(s) |
| Fetal Lung Summary |
| Roadmap Epigenome Fetal Lung Summary for 10 assay type(s) |
| Fetal Lung Right Summary |
| Roadmap Epigenome Fetal Lung Right Summary for 2 assay type(s) |
| Fetal Lung Left Summary |
| Roadmap Epigenome Fetal Lung Left Summary for 2 assay type(s) |
| Fetal Kidney Summary |
| Roadmap Epigenome Fetal Kidney Summary for 9 assay type(s) |
| Fetal Kidney Right Summary |
| Roadmap Epigenome Fetal Kidney Right Summary for 1 assay type(s) |
| Fetal Kidney Left Summary |
| Roadmap Epigenome Fetal Kidney Left Summary for 1 assay type(s) |
| Fetal Intestine Small Summary |
| Roadmap Epigenome Fetal Intestine Small Summary for 9 assay type(s) |
| Fetal Intestine Large Summary |
| Roadmap Epigenome Fetal Intestine Large Summary for 9 assay type(s) |
| Fetal Heart Summary |
| Roadmap Epigenome Fetal Heart Summary for 10 assay type(s) |
| Fetal Brain Summary |
| Roadmap Epigenome Fetal Brain Summary for 14 assay type(s) |
| Fetal Adrenal Gland Summary |
| Roadmap Epigenome Fetal Adrenal Gland Summary for 8 assay type(s) |
| Esophagus Summary |
| Roadmap Epigenome Esophagus Summary for 9 assay type(s) |
| ES-WA7 Summary |
| Roadmap Epigenome ES-WA7 Summary for 8 assay type(s) |
| ES-I3 Summary |
| Roadmap Epigenome ES-I3 Summary for 8 assay type(s) |
| Duodenum Smooth Muscle Summary |
| Roadmap Epigenome Duodenum Smooth Muscle Summary for 7 assay type(s) |
| Duodenum Mucosa Summary |
| Roadmap Epigenome Duodenum Mucosa Summary for 9 assay type(s) |
| Colonic Mucosa Summary |
| Roadmap Epigenome Colonic Mucosa Summary for 9 assay type(s) |
| Colon Smooth Muscle Summary |
| Roadmap Epigenome Colon Smooth Muscle Summary for 9 assay type(s) |
| Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells Summary |
| Roadmap Epigenome Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells Summary for 9 assay type(s) |
| CD8 Primary Cells Summary |
| Roadmap Epigenome CD8 Primary Cells Summary for 7 assay type(s) |
| CD8 Naive Primary Cells Summary |
| Roadmap Epigenome CD8 Naive Primary Cells Summary for 12 assay type(s) |
| CD8 Memory Primary Cells Summary |
| Roadmap Epigenome CD8 Memory Primary Cells Summary for 7 assay type(s) |
| CD56 Primary Cells Summary |
| Roadmap Epigenome CD56 Primary Cells Summary for 8 assay type(s) |
| CD4+CD25-Tr Summary |
| Roadmap Epigenome CD4+CD25-Tr Summary for 6 assay type(s) |
| CD4+CD25-Tm Summary |
| Roadmap Epigenome CD4+CD25-Tm Summary for 3 assay type(s) |
| CD4+CD25-Th17 Summary |
| Roadmap Epigenome CD4+CD25-Th17 Summary for 5 assay type(s) |
| CD4+CD25-Th Summary |
| Roadmap Epigenome CD4+CD25-Th Summary for 6 assay type(s) |
| CD4+CD25-N Summary |
| Roadmap Epigenome CD4+CD25-N Summary for 6 assay type(s) |
| CD4+CD25-MACS Summary |
| Roadmap Epigenome CD4+CD25-MACS Summary for 6 assay type(s) |
| CD4+CD25-M Summary |
| Roadmap Epigenome CD4+CD25-M Summary for 7 assay type(s) |
| CD4+ CD25int CD127+ Tmem Primary Cells Summary |
| Roadmap Epigenome CD4+ CD25int CD127+ Tmem Primary Cells Summary for 7 assay type(s) |
| CD4+ CD25- Th Primary Cells Summary |
| Roadmap Epigenome CD4+ CD25- Th Primary Cells Summary for 7 assay type(s) |
| CD4+ CD25- IL17- PMA-Ionomycin stimulated MACS purified Th Primary Cells Summary |
| Roadmap Epigenome CD4+ CD25- IL17- PMA-Ionomycin stimulated MACS purified Th Primary Cells Summary for 7 assay type(s) |
| CD4+ CD25- IL17+ PMA-Ionomcyin stimulated Th17 Primary Cells Summary |
| Roadmap Epigenome CD4+ CD25- IL17+ PMA-Ionomcyin stimulated Th17 Primary Cells Summary for 6 assay type(s) |
| CD4+ CD25- CD45RO+ Memory Primary Cells Summary |
| Roadmap Epigenome CD4+ CD25- CD45RO+ Memory Primary Cells Summary for 6 assay type(s) |
| CD4+ CD25- CD45RA+ Naive Primary Cells Summary |
| Roadmap Epigenome CD4+ CD25- CD45RA+ Naive Primary Cells Summary for 6 assay type(s) |
| CD4+ CD25+ CD127- Treg Primary Cells Summary |
| Roadmap Epigenome CD4+ CD25+ CD127- Treg Primary Cells Summary for 7 assay type(s) |
| CD4 Primary Cells Summary |
| Roadmap Epigenome CD4 Primary Cells Summary for 5 assay type(s) |
| CD4 Naive Primary Cells Summary |
| Roadmap Epigenome CD4 Naive Primary Cells Summary for 11 assay type(s) |
| CD4 Memory Primary Cells Summary |
| Roadmap Epigenome CD4 Memory Primary Cells Summary for 11 assay type(s) |
| CD34 Primary Cells Summary |
| Roadmap Epigenome CD34 Primary Cells Summary for 7 assay type(s) |
| CD34 Cultured Cells Summary |
| Roadmap Epigenome CD34 Cultured Cells Summary for 6 assay type(s) |
| CD3 Primary Cells Summary |
| Roadmap Epigenome CD3 Primary Cells Summary for 10 assay type(s) |
| CD20 Primary Cells Summary |
| Roadmap Epigenome CD20 Primary Cells Summary for 1 assay type(s) |
| CD19 Primary Cells Summary |
| Roadmap Epigenome CD19 Primary Cells Summary for 9 assay type(s) |
| CD15 Primary Cells Summary |
| Roadmap Epigenome CD15 Primary Cells Summary for 7 assay type(s) |
| CD14 Primary Cells Summary |
| Roadmap Epigenome CD14 Primary Cells Summary for 8 assay type(s) |
| Breast vHMEC Summary |
| Roadmap Epigenome Breast vHMEC Summary for 12 assay type(s) |
| Breast Stem Cells Summary |
| Roadmap Epigenome Breast Stem Cells Summary for 5 assay type(s) |
| Breast Myoepithelial Cells Summary |
| Roadmap Epigenome Breast Myoepithelial Cells Summary for 12 assay type(s) |
| Breast Luminal Epithelial Cells Summary |
| Roadmap Epigenome Breast Luminal Epithelial Cells Summary for 10 assay type(s) |
| Breast Fibroblast Primary Cells Summary |
| Roadmap Epigenome Breast Fibroblast Primary Cells Summary for 7 assay type(s) |
| Brain Substantia Nigra Summary |
| Roadmap Epigenome Brain Substantia Nigra Summary for 9 assay type(s) |
| Brain Mid Frontal Lobe Summary |
| Roadmap Epigenome Brain Mid Frontal Lobe Summary for 9 assay type(s) |
| Brain Inferior Temporal Lobe Summary |
| Roadmap Epigenome Brain Inferior Temporal Lobe Summary for 9 assay type(s) |
| Brain Hippocampus Middle Summary |
| Roadmap Epigenome Brain Hippocampus Middle Summary for 10 assay type(s) |
| Brain Germinal Matrix Summary |
| Roadmap Epigenome Brain Germinal Matrix Summary for 10 assay type(s) |
| Brain Cingulate Gyrus Summary |
| Roadmap Epigenome Brain Cingulate Gyrus Summary for 9 assay type(s) |
| Brain Cerebellum Summary |
| Roadmap Epigenome Brain Cerebellum Summary for 1 assay type(s) |
| Brain Anterior Caudate Summary |
| Roadmap Epigenome Brain Anterior Caudate Summary for 9 assay type(s) |
| Brain Angular Gyrus Summary |
| Roadmap Epigenome Brain Angular Gyrus Summary for 9 assay type(s) |
| Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells Summary |
| Roadmap Epigenome Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells Summary for 9 assay type(s) |
| Bladder Summary |
| Roadmap Epigenome Bladder Summary for 5 assay type(s) |
| Aorta Summary |
| Roadmap Epigenome Aorta Summary for 8 assay type(s) |
| Adult Liver Summary |
| Roadmap Epigenome Adult Liver Summary for 10 assay type(s) |
| Adult Kidney Summary |
| Roadmap Epigenome Adult Kidney Summary for 8 assay type(s) |
| Adrenal Gland Summary |
| Roadmap Epigenome Adrenal Gland Summary for 7 assay type(s) |
| Adipose Tissue Summary |
| Roadmap Epigenome Adipose Tissue Summary for 4 assay type(s) |
| Adipose Nuclei Summary |
| Roadmap Epigenome Adipose Nuclei Summary for 8 assay type(s) |
| Adipose Derived Mesenchymal Stem Cell Cultured Cells Summary |
| Roadmap Epigenome Adipose Derived Mesenchymal Stem Cell Cultured Cells Summary for 7 assay type(s) |
| Methylation Summary |
| Methylation Summary |
| RRBS Summary |
| Roadmap Epigenome RRBS Summary for 8 sample type(s) |
| MRE-Seq Summary |
| Roadmap Epigenome MRE-Seq Summary for 18 sample type(s) |
| MeDIP-Seq Summary |
| Roadmap Epigenome MeDIP-Seq Summary for 19 sample type(s) |
| Bisulfite-Seq Summary |
| Roadmap Epigenome Bisulfite-Seq Summary for 36 sample type(s) |
| Roadmap Uniformly Signal |
| Uniformly processed Signal from Roadmap Project |
| chromHMM |
| chromHMM tracks from Roadmap |
|
|
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|---|
| Base Position |
| Chromosome position in bases. (Clicks here zoom in 3x) |
| p14
Fix Patches |
| Reference Assembly Fix Patch Sequence Alignments |
| p14
Alt Haplotypes |
| Reference Assembly Alternate Haplotype Sequence Alignments |
| Assembly |
| Assembly from Fragments |
| BAC End Pairs |
| BAC End Pairs |
| BU ORChID |
| ORChID Predicted DNA Cleavage Sites from ENCODE/Boston Univ (Tullius lab) |
| Chromosome Band |
| Chromosome Bands Localized by FISH Mapping Clones |
deCODE Recomb |
| deCODE Recombination maps, 10Kb bin size, October 2010 |
| ENCODE Pilot |
| Regions Used for ENCODE Pilot Project (1%) |
| Exome Probesets |
| Exome Capture Probesets and Targeted Region |
|
FISH Clones |
| Clones Placed on Cytogenetic Map Using FISH |
|
Fosmid End Pairs |
| Fosmid End Pairs |
| Gap |
| Gap Locations |
| GC Percent |
| GC Percent in 5-Base Windows |
| GRC Incident |
| GRC Incident Database |
| GRC Map Contigs |
| Genome Reference Consortium Map Contigs |
| Hg18 Diff |
| Contigs New to GRCh37/(hg19), Not Carried Forward from NCBI Build 36(hg18) |
| Hg38 Diff |
| Contigs Dropped or Changed from GRCh37(hg19) to GRCh38(hg38) |
| Hi Seq Depth |
| Regions of Exceptionally High Depth of Aligned Short Reads |
| INSDC |
| Accession at INSDC - International Nucleotide Sequence Database Collaboration |
| liftOver & ReMap |
| UCSC LiftOver and NCBI ReMap: Genome alignments to convert annotations to hg38 |
| LRG Regions |
| Locus Reference Genomic (LRG) / RefSeqGene Sequences Mapped to Feb. 2009 (GRCh37/hg19) Assembly |
| Map Contigs |
| Physical Map Contigs |
| Mappability |
| Mappability or Uniqueness of Reference Genome from ENCODE |
| Problematic Regions |
| Problematic Regions for NGS or Sanger sequencing or very variable regions |
| Recomb Rate |
| Recombination Rate from deCODE, Marshfield, or Genethon Maps (deCODE default) |
| RefSeq Acc |
| RefSeq Accession |
| Restr Enzymes |
| Restriction Enzymes from REBASE |
| Short Match |
| Perfect Matches to Short Sequence () |
| STS Markers |
| STS Markers on Genetic (blue) and Radiation Hybrid (black) Maps |
|
|
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|---|
| UCSC Genes |
| UCSC Genes (RefSeq, GenBank, CCDS, Rfam, tRNAs & Comparative Genomics) |
| NCBI RefSeq |
| RefSeq genes from NCBI |
| CCDS |
| Consensus CDS |
| CRISPR Targets |
| CRISPR/Cas9 -NGG Targets, whole genome |
| Ensembl Genes |
| Ensembl Genes |
EvoFold |
| EvoFold Predictions of RNA Secondary Structure |
| Exoniphy |
| Exoniphy Human/Mouse/Rat/Dog |
| GENCODE Versions |
| Container of all new and previous GENCODE releases |
| GENCODE Genes V7 |
| Gene Annotations from ENCODE/GENCODE Version 7 |
| GENCODE Genes V14 |
| Gene Annotations from ENCODE/GENCODE Version 14 |
| GENCODE Genes V17 |
| Gene Annotations from ENCODE/GENCODE Version 17 |
| GENCODE Genes V19 |
| Gene Annotations from GENCODE Version 19 |
| GENCODE Gene V24lift37 |
| Gene Annotations from GENCODE Version 24lift37 |
| GENCODE Gene V27lift37 |
| Gene Annotations from GENCODE Version 27lift37 |
| GENCODE V28lift37 |
| GENCODE lifted annotations from V28lift37 (Ensembl 92) |
| GENCODE V31lift37 |
| GENCODE lifted annotations from V31lift37 (Ensembl 97) |
| GENCODE V33lift37 |
| GENCODE lifted annotations from V33lift37 (Ensembl 99) |
| GENCODE V34lift37 |
| GENCODE lifted annotations from V34lift37 (Ensembl 100) |
| GENCODE V35lift37 |
| GENCODE lifted annotations from V35lift37 (Ensembl 101) |
| GENCODE V36lift37 |
| GENCODE lifted annotations from V36lift37 (Ensembl 102) |
| GENCODE V37lift37 |
| GENCODE lifted annotations from V37lift37 (Ensembl 103) |
| GENCODE V38lift37 |
| GENCODE lifted annotations from V38lift37 (Ensembl 104) |
| GENCODE V39lift37 |
| GENCODE lifted annotations from V39lift37 (Ensembl 105) |
| GENCODE V40lift37 |
| GENCODE lifted annotations from V40lift37 (Ensembl 106) |
| GENCODE V41lift37 |
| GENCODE lifted annotations from V41lift37 (Ensembl 107) |
| GENCODE V42lift37 |
| GENCODE lifted annotations from V42lift37 (Ensembl 108) |
| GENCODE V43lift37 |
| GENCODE lifted annotations from V43lift37 (Ensembl 109) |
| GENCODE V44lift37 |
| GENCODE lifted annotations from V44lift37 (Ensembl 110) |
| GENCODE V45lift37 |
| GENCODE lifted annotations from V45lift37 (Ensembl 111) |
| H-Inv 7.0 |
| H-Inv 7.0 Gene Predictions |
| HGNC |
| HUGO Gene Nomenclature |
| IKMC Genes Mapped |
| International Knockout Mouse Consortium Genes Mapped to Human Genome |
| lincRNAs |
| Human Body Map lincRNAs and TUCP Transcripts |
| lincRNA Transcripts |
| lincRNA and TUCP transcripts |
| lincRNA RNA-Seq Reads |
| lincRNA RNA-Seq reads expression abundances |
| LRG Transcripts |
| Locus Reference Genomic (LRG) / RefSeqGene Fixed Transcript Annotations |
| MGC/ORFeome Genes |
| MGC/ORFeome Full ORF mRNA Clones |
| ORFeome Clones |
| ORFeome Collaboration Gene Clones |
| MGC Genes |
| Mammalian Gene Collection Full ORF mRNAs |
| Old UCSC Genes |
| Previous Version of UCSC Genes |
| Other RefSeq |
| Non-Human RefSeq Genes |
| Pfam in UCSC Gene |
| Pfam Domains in UCSC Genes |
| Prediction Archive |
| Gene Prediction Archive |
| SIB Genes |
| Swiss Institute of Bioinformatics Gene Predictions from mRNA and ESTs |
| SGP Genes |
| SGP Gene Predictions Using Mouse/Human Homology |
| N-SCAN |
| N-SCAN Gene Predictions |
| Genscan Genes |
| Genscan Gene Predictions |
| Geneid Genes |
| Geneid Gene Predictions |
| AUGUSTUS |
| AUGUSTUS ab initio gene predictions v3.1 |
| AceView Genes |
| AceView Gene Models With Alt-Splicing |
| Retroposed Genes |
| Retroposed Genes V5, Including Pseudogenes |
| sno/miRNA |
| C/D and H/ACA Box snoRNAs, scaRNAs, and microRNAs from snoRNABase and miRBase |
| TransMap V5 |
| TransMap Alignments Version 5 |
| TransMap ESTs |
| TransMap EST Mappings Version 5 |
| TransMap RNA |
| TransMap GenBank RNA Mappings Version 5 |
| TransMap RefGene |
| TransMap RefSeq Gene Mappings Version 5 |
| TransMap Ensembl |
| TransMap Ensembl and GENCODE Mappings Version 5 |
| tRNA Genes |
| Transfer RNA Genes Identified with tRNAscan-SE |
| UCSC Alt Events |
| Alternative Splicing, Alternative Promoter and Similar Events in UCSC Genes |
| UniProt |
| UniProt SwissProt/TrEMBL Protein Annotations |
| Vega Genes |
| Vega Annotations |
| Yale Pseudo60 |
| Yale Pseudogenes based on Ensembl Release 60 |
|
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| Publications |
| Publications: Sequences in Scientific Articles |
| COVID Rare Harmful Var |
| Rare variants underlying COVID-19 severity and susceptibility from the COVID Human Genetics Effort |
| new
AbSplice Scores |
| Aberrant Splicing Prediction Scores |
| CADD |
| CADD 1.6 Score for all single-basepair mutations and selected insertions/deletions |
| Insertions |
| CADD 1.6 Score: Insertions - label is length of insertion |
| Deletions |
| CADD 1.6 Score: Deletions - label is length of deletion |
| CADD |
| CADD 1.6 Score for all possible single-basepair mutations (zoom in for scores) |
| ClinGen |
| ClinGen curation activities (Dosage Sensitivity and Gene-Disease Validity) |
ClinGen CNVs |
| Clinical Genome Resource (ClinGen) CNVs |
| ClinVar Variants |
| ClinVar Variants |
| Constraint scores |
| Human constraint scores |
| MTR All Data |
| MTR - Missense Tolerance Ratio Scores all annotations |
| MTR Scores |
| MTR - Missense Tolerance Ratio Scores by base |
| MetaDome All Data |
| MetaDome - Tolerance Landscape score all annotations |
| MetaDome |
| MetaDome - Tolerance Landscape score |
| HMC |
| HMC - Homologous Missense Constraint Score on PFAM domains |
| JARVIS |
| JARVIS: score to prioritize non-coding regions for disease relevance |
| Coriell CNVs |
| Coriell Cell Line Copy Number Variants |
| Development Delay |
| Copy Number Variation Morbidity Map of Developmental Delay |
| Dosage Sensitivity |
| pHaplo and pTriplo dosage sensitivity map from Collins et al 2022 |
| GAD View |
| Genetic Association Studies of Complex Diseases and Disorders |
| GenCC |
| The Gene Curation Coalition Annotations |
| Gene Interactions |
| Protein Interactions from Curated Databases and Text-Mining |
| GeneReviews |
| GeneReviews |
| GWAS Catalog |
| NHGRI-EBI Catalog of Published Genome-Wide Association Studies |
| Haploinsufficiency |
| Haploinsufficiency predictions for genes from DECIPHER |
| HGMD public |
| Human Gene Mutation Database - Public Version Dec 2022 |
| Lens Patents |
| Lens PatSeq Patent Document Sequences |
|
MGI Mouse QTL |
| MGI Mouse Quantitative Trait Loci Coarsely Mapped to Human |
| Orphanet |
| Orphadata: Aggregated Data From Orphanet |
| PanelApp |
| Genomics England PanelApp Diagnostics |
| Polygenic Risk Scores |
| Polygenic Risk Scores |
| PRS eMERGE |
| Polygenic Risk Scores from NHGRI Electronic Medical Records and Genomics (eMERGE) project |
| new
Prediction Scores |
| Human Prediction Scores |
| new
BayesDel |
| BayesDel - deleteriousness meta-score |
| REVEL Scores |
| REVEL Pathogenicity Score for single-base coding mutations (zoom for exact score) |
|
RGD Human QTL |
| Human Quantitative Trait Locus from RGD |
|
RGD Rat QTL |
| Rat Quantitative Trait Locus from RGD Coarsely Mapped to Human |
| SNPedia |
| SNPedia |
| UniProt Variants |
| UniProt/SwissProt Amino Acid Substitutions |
| Variants in Papers |
| Genetic Variants mentioned in scientific publications |
| Mastermind Variants |
| Genomenon Mastermind Variants extracted from full text publications |
| Avada Variants |
| Avada Variants extracted from full text publications |
| Web Sequences |
| DNA Sequences in Web Pages Indexed by Bing.com / Microsoft Research |
|
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|
CGAP SAGE |
| CGAP Long SAGE |
| Gene Bounds |
| Gene Boundaries as Defined by RNA and Spliced EST Clusters |
|
H-Inv |
| H-Invitational Genes mRNA Alignments |
| Human ESTs |
| Human ESTs Including Unspliced |
| Human mRNAs |
| Human mRNAs from GenBank |
| Human RNA Editing |
| Human RNA Editing from the DAtabase of RNa EDiting |
| Other ESTs |
| Non-Human ESTs from GenBank |
| Other mRNAs |
| Non-Human mRNAs from GenBank |
|
Poly(A) |
| Poly(A) Sites, Both Reported and Predicted |
| PolyA-Seq |
| Poly(A)-sequencing from Merck Research Laboratories |
| SIB Alt-Splicing |
| Alternative Splicing Graph from Swiss Institute of Bioinformatics |
| Spliced ESTs |
| Human ESTs That Have Been Spliced |
| UniGene |
| UniGene Alignments |
|
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| GTEx Gene V8 |
| Gene Expression in 54 tissues from GTEx RNA-seq of 17382 samples, 948 donors (V8, Aug 2019) |
| Allen Brain |
| Allen Brain Atlas Probes |
| Burge RNA-seq |
| Burge Lab RNA-seq Aligned by GEM Mapper |
| CSHL Small RNA-seq |
| Small RNA-seq from ENCODE/Cold Spring Harbor Lab |
| ENC Exon Array |
| ENCODE Exon Array |
| UW Affy Exon |
| Affymetrix Exon Array from ENCODE/University of Washington |
| Duke Affy Exon |
| Affymetrix Exon Array from ENCODE/Duke |
| ENC ProtGeno |
| ENCODE Proteogenomics |
| UNC/BSU ProtGeno |
| Proteogenomics Hg19 Mapping from ENCODE/Univ. North Carolina/Boise State Univ. |
| UNC/BSU ProtGenc |
| Proteogenomics Hg19 and GENCODE Mapping from ENCODE/Univ. North Carolina/Boise State Univ. |
| ENC RNA-seq |
| ENCODE RNA-seq |
| SYDH RNA-seq |
| RNA-seq from ENCODE/Stanford/Yale/USC/Harvard |
| HAIB RNA-seq |
| RNA-seq from ENCODE/HAIB |
| GIS RNA-seq |
| RNA-seq from ENCODE/Genome Institute of Singapore |
| CSHL Long RNA-seq |
| Long RNA-seq from ENCODE/Cold Spring Harbor Lab |
| Caltech RNA-seq |
| RNA-seq from ENCODE/Caltech |
| EPDnew Promoters |
| Promoters from EPDnew human version 006 |
| Affy Archive |
| Affymetrix Archive |
| Affy U133Plus2 |
| Alignments of Affymetrix Consensus/Exemplars from HG-U133 Plus 2.0 |
| Affy U133 |
| Alignments of Affymetrix Consensus/Exemplars from HG-U133 |
| Affy U95 |
| Alignments of Affymetrix Consensus/Exemplars from HG-U95 |
| Affy RNA Loc |
| RNA Subcellular Localization by Tiling Microarray from ENCODE Affymetrix/CSHL |
| Affy GNF1H |
| Alignments of Affymetrix Consensus/Exemplars from GNF1H |
| Affy Exon Array |
| Affymetrix Human Exon Array Probes and Probesets |
| GIS RNA PET |
| RNA Sub-cellular Localization by Paired-end diTag Sequencing from ENCODE/GIS |
| GNF Atlas 2 |
| GNF Expression Atlas 2 |
| GTEx Gene |
| Gene Expression in 53 tissues from GTEx RNA-seq of 8555 samples (570 donors) |
| GTEx Transcript |
| Transcript Expression in 53 tissues from GTEx RNA-seq of 8555 samples/570 donors |
| GWIPS-viz Riboseq |
| Ribosome Profiling from GWIPS-viz |
|
Illumina WG-6 |
| Alignments of Illumina WG-6 3.0 Probe Set |
| PeptideAtlas |
| Peptide sequences identified from MS spectra of 971 samples by PeptideAtlas |
| qPCR Primers |
| Human (hg19) Whole Transcriptome qPCR Primers |
| RIKEN CAGE Loc |
| RNA Subcellular CAGE Localization from ENCODE/RIKEN |
|
Sestan Brain |
| Sestan Lab Human Brain Atlas Microarrays |
|
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|---|
| ENCODE Regulation |
| Integrated Regulation from ENCODE |
| Txn Fac ChIP V2 |
| Transcription Factor ChIP-seq from ENCODE (V2) |
| Txn Factor ChIP |
| Transcription Factor ChIP-seq Clusters (161 factors) from ENCODE with Factorbook Motifs |
| Txn Factr ChIP E3 |
| Transcription Factor ChIP-seq Clusters (338 factors, 130 cell types) from ENCODE 3 |
| DNase Clusters |
| DNaseI Hypersensitivity Clusters in 125 cell types from ENCODE (V3) |
| Layered H3K27Ac |
| H3K27Ac Mark (Often Found Near Active Regulatory Elements) on 7 cell lines from ENCODE |
| Layered H3K4Me3 |
| H3K4Me3 Mark (Often Found Near Promoters) on 7 cell lines from ENCODE |
| Layered H3K4Me1 |
| H3K4Me1 Mark (Often Found Near Regulatory Elements) on 7 cell lines from ENCODE |
| Transcription |
| Transcription Levels Assayed by RNA-seq on 9 Cell Lines from ENCODE |
|
CD34 DnaseI |
| Eur. Inst. Oncology/J. C. Venter Inst. Nuclease Accessible Sites |
| CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
| Unmasked CpG |
| CpG Islands on All Sequence (Islands < 300 Bases are Light Green) |
| CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
| ENC Chromatin |
| ENCODE Chromatin Interactions |
| UW 5C | Downloads | Chromatin Interactions by 5C from ENCODE/University of Washington |
| UMass 5C |
| Chromatin Interactions by 5C from ENCODE/Dekker Univ. Mass. |
GIS ChIA-PET |
| Chromatin Interaction Analysis Paired-End Tags (ChIA-PET) from ENCODE/GIS-Ruan |
| ENC DNA Methyl |
| ENCODE DNA Methylation |
| HAIB Methyl450 |
| CpG Methylation by Methyl 450K Bead Arrays from ENCODE/HAIB |
| HAIB Methyl RRBS |
| DNA Methylation by Reduced Representation Bisulfite Seq from ENCODE/HudsonAlpha |
| ENC DNase/FAIRE |
| ENCODE Open Chromatin by DNaseI HS and FAIRE |
| UW DNaseI HS |
| DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington |
| UW DNaseI DGF |
| DNaseI Digital Genomic Footprinting from ENCODE/University of Washington |
| UNC FAIRE |
| Open Chromatin by FAIRE from ENCODE/OpenChrom(UNC Chapel Hill) |
| Duke DNaseI HS |
| Open Chromatin by DNaseI HS from ENCODE/OpenChrom(Duke University) |
| Open Chrom Synth |
| DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom(Duke/UNC/UTA) |
| Uniform DNaseI HS |
| DNaseI Hypersensitivity Uniform Peaks from ENCODE/Analysis |
| Master DNaseI HS |
| DNaseI Hypersensitive Site Master List (125 cell types) from ENCODE/Analysis |
| ENC Histone |
| ENCODE Histone Modification |
| UW Histone |
| Histone Modifications by ChIP-seq from ENCODE/University of Washington |
| SYDH Histone |
| Histone Modifications by ChIP-seq from ENCODE/Stanford/Yale/USC/Harvard |
| Broad Histone |
| Histone Modifications by ChIP-seq from ENCODE/Broad Institute |
| Broad ChromHMM |
| Chromatin State Segmentation by HMM from ENCODE/Broad |
| ENC RNA Binding |
| ENCODE RNA Binding Proteins |
| SUNY RIP-seq |
| RIP-seq from ENCODE/SUNY Albany |
| SUNY RIP Tiling |
| RNA Binding Protein Associated RNA by Tiling Array from ENCODE/SUNY Albany |
| SUNY RIP GeneST |
| RNA Binding Protein Associated RNA by RIP-chip GeneST from ENCODE/SUNY Albany |
| ENC TF Binding |
| ENCODE Transcription Factor Binding |
| Uniform TFBS |
| Transcription Factor ChIP-seq Uniform Peaks from ENCODE/Analysis |
| ENCODE 3 TFBS |
| Transcription Factor ChIP-seq Peaks (338 factors in 130 cell types) from ENCODE 3 |
| UW CTCF Binding |
| CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington |
| UTA TFBS |
| Open Chromatin TFBS by ChIP-seq from ENCODE/Open Chrom(UT Austin) |
| UChicago TFBS |
| Transcription Factor Binding Sites by Epitope-Tag from ENCODE/UChicago |
| SYDH TFBS |
| Transcription Factor Binding Sites by ChIP-seq from ENCODE/Stanford/Yale/USC/Harvard |
| HAIB TFBS |
| Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB |
| new
FANTOM5 |
| FANTOM5: Mapped transcription start sites (TSS) and their usage |
| TSS activity (TPM) |
| FANTOM5: TSS activity per sample (TPM) |
| TSS activity - read counts |
| FANTOM5: TSS activity per sample read counts |
| FANTOM CAT |
| FANTOM5: atlas of human long non-coding RNAs with accurate 5' ends |
| Max counts of CAGE reads |
| FANTOM5: Max counts of CAGE reads |
| Total counts of CAGE reads |
| FANTOM5: Total counts of CAGE reads |
| TSS peaks |
| FANTOM5: DPI peak, robust set |
| Enhancer - promoter correlations distances organ |
| FANTOM5: Enhancer - promoter correlations distances organ |
| Enhancer - promoter correlations distances cell type |
| FANTOM5: Enhancer - promoter correlations distances cell type |
| FANTOM-NET Enhancers |
| FANTOM5: FANTOM-NET Enhancers |
| Enhancers |
| FANTOM5: Enhancers |
| FSU Repli-chip |
| Replication Timing by Repli-chip from ENCODE/FSU |
| Genome Segments |
| Genome Segmentations from ENCODE |
| GTEx Combined eQTL |
| Combined Expression QTLs from 44 Tissues from GTEx (midpoint release, V6) |
| GTEx Tissue eQTL |
| Expression QTLs in 44 tissues from GTEx (midpoint release, V6) |
| updated
JASPAR Transcription Factors |
| JASPAR Transcription Factor Binding Site Database |
|
NKI Nuc Lamina |
| NKI Nuclear Lamina Associated Domains (LaminB1 DamID) |
| NKI LADs (Tig3) |
| NKI LADs (Lamina Associated Domains, Tig3 cells) |
| LaminB1 (Tig3) |
| NKI LaminB1 DamID Map (log2-ratio scores, Tig3 cells) |
| ORegAnno |
| Regulatory elements from ORegAnno |
| Rao 2014 Hi-C |
| Hi-C on 7 cell lines from Rao 2014 |
| ReMap ChIP-seq |
| ReMap Atlas of Regulatory Regions |
| Stanf Nucleosome |
| Nucleosome Position by MNase-seq from ENCODE/Stanford/BYU |
| SUNY SwitchGear |
| RNA Binding Protein Associated RNA by SwitchGear from ENCODE/SUNY Albany |
|
SwitchGear TSS |
| SwitchGear Genomics Transcription Start Sites |
| TFBS Conserved |
| HMR Conserved Transcription Factor Binding Sites |
| TS miRNA Targets |
| TargetScan predicted microRNA target sites |
| TS miRNA v7.2 |
| Predicted microRNA Target Sites from TargetScanHuman 7.2 (March 2018) |
| TS miRNA sites |
| TargetScan miRNA Regulatory Sites (Release 5.1, April 2009) |
| UCSF Brain Methyl |
| UCSF Brain DNA Methylation |
| UMMS Brain Hist |
| Brain Histone H3K4me3 ChIP-Seq from Univ. Mass. Medical School (Akbarian/Weng) |
| UW Repli-seq |
| Replication Timing by Repli-seq from ENCODE/University of Washington |
| VISTA Enhancers |
| VISTA Enhancers |
|
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|---|
| Conservation |
| Vertebrate Multiz Alignment & Conservation (100 Species) |
| Cons 46-Way |
| Vertebrate Multiz Alignment & Conservation (46 Species) |
|
Cons Indels MmCf |
| Indel-based Conservation for Human hg19, Mouse mm8 and Dog canFam2 |
|
Evo Cpg |
| Weizmann Evolutionary CpG Islands |
| GERP |
| GERP Scores for Mammalian Alignments |
| phastBias gBGC |
| phastBias gBGC predictions |
| Primate Chain/Net |
| Primate Genomes, Chain and Net Alignments |
| Placental Chain/Net |
| Non-primate Placental Mammal Genomes, Chain and Net Alignments |
| Vertebrate Chain/Net |
| Non-placental Vertebrate Genomes, Chain and Net Alignments |
| CHM13 alignments |
| CHM13 (GCA_009914755.4) v1_nfLO liftOver alignments |
|
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|
5% Lowest S |
| Selective Sweep Scan (S): 5% Smallest S scores |
|
Cand. Gene Flow |
| Candidate Regions for Gene Flow from Neandertal to Non-African Modern Humans |
|
H-C Coding Diffs |
| Neandertal Alleles in Human/Chimp Coding Non-synonymous Differences in Human Lineage |
| Neandertal Methyl |
| Neandertal Reconstructed DNA Methylation Map |
|
Neandertal Mito |
| Neandertal Mitochondrial Sequence (Vi33.16, 2008) |
| Neandertal Seq |
| Neandertal Sequence Reads |
|
S SNPs |
| SNPS Used for Selective Sweep Scan (S) |
|
Sel Swp Scan (S) |
| Selective Sweep Scan (S) on Neandertal vs. Human Polymorphisms (Z-Score +- Variance) |
|
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| Denisova Methyl |
| Denisova Reconstructed DNA Methylation Map |
| Denisova Seq |
| Denisova High-Coverage Sequence Reads |
| Denisova Variants |
| Variant Calls from High-Coverage Genome Sequence of an Archaic Denisovan Individual |
| Mod Hum Variants |
| Variant Calls from 11 Modern Human Genome Sequences |
| Modern Derived |
| Modern Human Derived, Denisova Ancestral |
|
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| dbSNP 155 |
| Short Genetic Variants from dbSNP release 155 |
| COVID GWAS v4 |
| COVID risk variants from GWAS meta-analyses by the COVID-19 Host Genetics Initiative (Rel 4, Oct 2020) |
| COVID GWAS v3 |
| GWAS meta-analyses from the COVID-19 Host Genetics Initiative |
| 1000G Archive |
| 1000 Genomes Archive |
| 1000G Ph3 Vars |
| 1000 Genomes Phase 3 Integrated Variant Calls: SNVs, Indels, SVs |
| 1000G Ph3 Accsbl |
| 1000 Genomes Project Phase 3 Paired-end Accessible Regions |
| 1000G Ph1 Vars |
| 1000 Genomes Phase 1 Integrated Variant Calls: SNVs, Indels, SVs |
| 1000G Ph1 Accsbl |
| 1000 Genomes Project Phase 1 Paired-end Accessible Regions |
| Array Probesets |
| Microarray Probesets |
| dbSNP Archive |
| dbSNP Track Archive |
| Mult. SNPs(138) |
| Simple Nucleotide Polymorphisms (dbSNP 138) That Map to Multiple Genomic Loci |
| Flagged SNPs(138) |
| Simple Nucleotide Polymorphisms (dbSNP 138) Flagged as Clinically Assoc |
| Common SNPs(138) |
| Simple Nucleotide Polymorphisms (dbSNP 138) Found in >= 1% of Samples |
| All SNPs(138) |
| Simple Nucleotide Polymorphisms (dbSNP 138) |
| Flagged SNPs(141) |
| Simple Nucleotide Polymorphisms (dbSNP 141) Flagged by dbSNP as Clinically Assoc |
| Common SNPs(141) |
| Simple Nucleotide Polymorphisms (dbSNP 141) Found in >= 1% of Samples |
| All SNPs(141) |
| Simple Nucleotide Polymorphisms (dbSNP 141) |
| Mult. SNPs(142) |
| Simple Nucleotide Polymorphisms (dbSNP 142) That Map to Multiple Genomic Loci |
| Flagged SNPs(142) |
| Simple Nucleotide Polymorphisms (dbSNP 142) Flagged by dbSNP as Clinically Assoc |
| Common SNPs(142) |
| Simple Nucleotide Polymorphisms (dbSNP 142) Found in >= 1% of Samples |
| All SNPs(142) |
| Simple Nucleotide Polymorphisms (dbSNP 142) |
| Mult. SNPs(144) |
| Simple Nucleotide Polymorphisms (dbSNP 144) That Map to Multiple Genomic Loci |
| Flagged SNPs(144) |
| Simple Nucleotide Polymorphisms (dbSNP 144) Flagged by dbSNP as Clinically Assoc |
| Common SNPs(144) |
| Simple Nucleotide Polymorphisms (dbSNP 144) Found in >= 1% of Samples |
| All SNPs(144) |
| Simple Nucleotide Polymorphisms (dbSNP 144) |
| Mult. SNPs(146) |
| Simple Nucleotide Polymorphisms (dbSNP 146) That Map to Multiple Genomic Loci |
| Flagged SNPs(146) |
| Simple Nucleotide Polymorphisms (dbSNP 146) Flagged by dbSNP as Clinically Assoc |
| Common SNPs(146) |
| Simple Nucleotide Polymorphisms (dbSNP 146) Found in >= 1% of Samples |
| All SNPs(146) |
| Simple Nucleotide Polymorphisms (dbSNP 146) |
| Mult. SNPs(147) |
| Simple Nucleotide Polymorphisms (dbSNP 147) That Map to Multiple Genomic Loci |
| Flagged SNPs(147) |
| Simple Nucleotide Polymorphisms (dbSNP 147) Flagged by dbSNP as Clinically Assoc |
| Common SNPs(147) |
| Simple Nucleotide Polymorphisms (dbSNP 147) Found in >= 1% of Samples |
| All SNPs(147) |
| Simple Nucleotide Polymorphisms (dbSNP 147) |
| Mult. SNPs(150) |
| Simple Nucleotide Polymorphisms (dbSNP 150) That Map to Multiple Genomic Loci |
| Flagged SNPs(150) |
| Simple Nucleotide Polymorphisms (dbSNP 150) Flagged by dbSNP as Clinically Assoc |
| Common SNPs(150) |
| Simple Nucleotide Polymorphisms (dbSNP 150) Found in >= 1% of Samples |
| All SNPs(150) |
| Simple Nucleotide Polymorphisms (dbSNP 150) |
| Mult. SNPs(151) |
| Simple Nucleotide Polymorphisms (dbSNP 151) That Map to Multiple Genomic Loci |
| Flagged SNPs(151) |
| Simple Nucleotide Polymorphisms (dbSNP 151) Flagged by dbSNP as Clinically Assoc |
| All SNPs(151) |
| Simple Nucleotide Polymorphisms (dbSNP 151) |
| Common SNPs(151) |
| Simple Nucleotide Polymorphisms (dbSNP 151) Found in >= 1% of Samples |
| dbSNP 153 |
| Short Genetic Variants from dbSNP release 153 |
| dbVar Common Struct Var |
| NCBI Curated Common Structural Variants from dbVar |
| dbVar Conflict SV |
| NCBI dbVar Curated Conflict Variants |
| dbVar Common SV |
| NCBI dbVar Curated Common Structural Variants |
| DGV Struct Var |
| Database of Genomic Variants: Structural Variation (CNV, Inversion, In/del) |
| EVS Variants |
| NHLBI GO Exome Sequencing Project (ESP) - Variants from 6,503 Exomes |
| ExAC |
| Exome Aggregation Consortium (ExAC) Variants and Calling Regions |
| Genome In a Bottle |
| Genome In a Bottle Structural Variants and Trios |
|
Genome Variants |
| Personal Genome Variants |
| GIS DNA PET |
| ENCODE Genome Institute of Singapore DNA Paired-End Ditags |
| updated
gnomAD |
| Genome Aggregation Database (gnomAD) - Variants, Coverage, and Constraint |
| gnomAD Structural Variants |
| Genome Aggregation Database (gnomAD) - Structural Variants |
| gnomAD pext |
| gnomAD Proportion Expression Across Transcript Scores (pext) |
| gnomAD Genomes Variants |
| Genome Aggregation Database (gnomAD) Genome Variants v2.1.1 |
| updated
gnomAD Exomes Variants |
| Genome Aggregation Database (gnomAD) Exome Variants v2.1.1 |
| gnomAD Coverage |
| Genome Aggregation Database (gnomAD) - Genome and Exome Sample Coverage |
| gnomAD Constraint Metrics |
| Genome Aggregation Database (gnomAD) - Predicted Constraint Metrics (pLI and Z-scores) |
| HAIB Genotype |
| Genotype (CNV and SNP) by Illumina 1MDuo and CBS from ENCODE/HudsonAlpha |
|
HapMap SNPs |
| HapMap SNPs (rel27, merged Phase II + Phase III genotypes) |
| HGDP Allele Freq |
| Human Genome Diversity Project SNP Population Allele Frequencies |
| Platinum Genomes |
| Platinum genome variants |
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| RepeatMasker |
| Repeating Elements by RepeatMasker |
| Interrupted Rpts |
| Fragments of Interrupted Repeats Joined by RepeatMasker ID |
| Microsatellite |
| Microsatellites - Di-nucleotide and Tri-nucleotide Repeats |
| NumtS Sequence |
| Human NumtS mitochondrial sequence |
| Segmental Dups |
| Duplications of >1000 Bases of Non-RepeatMasked Sequence |
| Self Chain |
| Human Chained Self Alignments |
| Simple Repeats |
| Simple Tandem Repeats by TRF |
| WM + SDust |
| Genomic Intervals Masked by WindowMasker + SDust |
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