Control track and group visibility more selectively below.
|
|
|---|
| Base Position |
| Chromosome position in bases. (Clicks here zoom in 3x) |
| Alt Haplotypes |
| Alternate Haplotypes to Reference Sequence Correspondence |
| Assembly |
| Assembly from Fragments |
| BAC End Pairs |
| BAC End Pairs |
| BU ORChID |
| ENCODE Boston Univ (Tullius Lab) ORChID Predicted DNA Cleavage Sites |
| Chromosome Band |
| Chromosome Bands Localized by FISH Mapping Clones |
| Coverage |
| Clone Coverage |
| deCODE Recomb |
| deCODE Recombination maps, 10Kb bin size, October 2010 |
| FISH Clones |
| Clones Placed on Cytogenetic Map Using FISH |
| Fosmid End Pairs |
| Fosmid End Pairs |
| Gap |
| Gap Locations |
| GC Percent |
| GC Percent in 5-Base Windows |
| Hg19 Diff |
| Contigs dropped or changed from NCBI build 36(hg18) to GRCh37(hg19) |
| Hi Seq Depth |
| Regions of Exceptionally High Depth of Aligned Short Reads |
| Map Contigs |
| Physical Map Contigs |
| Mappability |
| Mappability or Uniqueness of Reference Genome |
| Recomb Rate |
| Recombination Rate from deCODE, Marshfield, or Genethon Maps (deCODE default) |
| Restr Enzymes |
| Restriction Enzymes from REBASE |
| Short Match |
| Perfect Matches to Short Sequence () |
| STS Markers |
| STS Markers on Genetic (blue) and Radiation Hybrid (black) Maps |
|
|
|
|
|---|
ClinGen CNVs |
| Clinical Genome Resource (ClinGen) CNVs |
| GAD View |
| Genetic Association Studies of Complex Diseases and Disorders |
| GeneReviews |
| GeneReviews |
| GWAS Catalog |
| NHGRI-EBI Catalog of Published Genome-Wide Association Studies |
| MGI Mouse QTL |
| MGI Mouse Quantitative Trait Loci Coarsely Mapped to Human |
| R-DMR |
| Reprogrammed Differentially Methylated Regions |
| RGD Human QTL |
| Human Quantitative Trait Locus from RGD |
| RGD Rat QTL |
| Rat Quantitative Trait Locus from RGD Coarsely Mapped to Human |
|
|
|
|
|---|
| UCSC Genes |
| UCSC Genes (RefSeq, GenBank, tRNAs & Comparative Genomics) |
| RefSeq Genes |
| RefSeq Genes |
| ACEScan |
| ACEScan Alternative Conserved Human-Mouse Exon Predictions |
| AceView Genes |
| AceView Gene Models With Alt-Splicing |
| Augustus |
| Augustus Gene Predictions |
| CCDS |
| Consensus CDS |
| CONTRAST |
| CONTRAST Gene Predictions |
| Ensembl Genes |
| Ensembl Genes |
| EvoFold |
| EvoFold Predictions of RNA Secondary Structure |
| EvoFold v.2 |
| EvoFold v.2 Predictions of RNA Secondary Structure |
| Exoniphy |
| Exoniphy Human/Mouse/Rat/Dog |
| Gencode Genes |
| ENCODE Gencode Gene Annotations |
| Geneid Genes |
| Geneid Gene Predictions |
| Genscan Genes |
| Genscan Gene Predictions |
| MGC Genes |
| Mammalian Gene Collection Full ORF mRNAs |
| N-SCAN |
| N-SCAN Gene Predictions |
| Old UCSC Genes |
| Previous Version of UCSC Genes |
| ORFeome Clones |
| ORFeome Collaboration Gene Clones |
| Other RefSeq |
| Non-Human RefSeq Genes |
| Pfam in UCSC Gene |
| Pfam Domains in UCSC Genes |
| Pos Sel Genes |
| Positively Selected Genes (6 species) |
| RNA Genes |
| Non-coding RNA Genes (dark) and Pseudogenes (light) |
| SGP Genes |
| SGP Gene Predictions Using Mouse/Human Homology |
| SIB Genes |
| Swiss Institute of Bioinformatics Gene Predictions from mRNA and ESTs |
| sno/miRNA |
| C/D and H/ACA Box snoRNAs, scaRNAs, and microRNAs from snoRNABase and miRBase |
| tRNA Genes |
| Transfer RNA Genes Identified with tRNAscan-SE |
| UCSC Alt Events |
| Alternative Splicing, Alternative Promoter and Similar Events in UCSC Genes |
| Vega Genes |
| Vega Annotations |
|
|
|
|
|---|
| Human mRNAs |
| Human mRNAs from GenBank |
| Spliced ESTs |
| Human ESTs That Have Been Spliced |
| CGAP SAGE |
| CGAP Long SAGE |
| Gene Bounds |
| Gene Boundaries as Defined by RNA and Spliced EST Clusters |
| H-Inv |
| H-Invitational Genes mRNA Alignments |
| Human ESTs |
| Human ESTs Including Unspliced |
| Human RNA Editing |
| Human RNA Editing from the DAtabase of RNa EDiting |
| Other ESTs |
| Non-Human ESTs from GenBank |
| Other mRNAs |
| Non-Human mRNAs from GenBank |
| Poly(A) |
| Poly(A) Sites, Both Reported and Predicted |
| SIB Alt-Splicing |
| Alternative Splicing Graph from Swiss Institute of Bioinformatics |
| UniGene |
| UniGene Alignments |
|
|
|
|
|---|
| Affy Exon |
| Affymetrix All Exon Microarrays |
| Affy Exon Tissues |
| Affymetrix Exon Array 1.0: Normal Tissues |
| Affy Exon Probes |
| Affymetrix Exon Array 1.0: Probesets |
| Affy GNF1H |
| Alignments of Affymetrix Consensus/Exemplars from GNF1H |
| Affy RNA Loc |
| ENCODE Affymetrix/CSHL Subcellular RNA Localization by Tiling Array |
| Affy Txn |
| Affy Transcriptome Phase 3 |
| Affy Tx sRNA Sig |
| Affymetrix Transcriptome Phase 3 Short RNA Signal |
| Affy Tx sRNA Reg |
| Affymetrix Transcriptome Phase 3 Short RNA Fragments |
| Affy Tx lRNA Sig |
| Affymetrix Transcriptome Phase 3 Long RNA Signal |
| Affy Tx lRNA Reg |
| Affymetrix Transcriptome Phase 3 Long RNA Fragments |
| Affy U133 |
| Alignments of Affymetrix Consensus/Exemplars from HG-U133 |
| Affy U133Plus2 |
| Alignments of Affymetrix Consensus/Exemplars from HG-U133 Plus 2.0 |
| Affy U95 |
| Alignments of Affymetrix Consensus/Exemplars from HG-U95 |
| Allen Brain |
| Allen Brain Atlas Probes |
| B-Cell Transcriptome |
| B-Cell Transcriptome (RNA-Seq) |
| Bertone Yale TAR |
| Yale Transcriptionally Active Regions (TARs) (Bertone data) |
| Burge RNA-seq |
| Burge Lab RNA-seq Aligned by GEM Mapper |
| Caltech RNA-seq |
| ENCODE Caltech RNA-seq |
| CSHL Long RNA-seq |
| ENCODE Cold Spring Harbor Labs Long RNA-seq |
| CSHL Sm RNA-seq |
| ENCODE Cold Spring Harbor Labs Small RNA-seq |
| Duke Affy Exon |
| ENCODE Duke Affy All-Exon Arrays |
| GIS PET Loc |
| ENCODE GIS Subcellular RNA Localization by Paired End diTag Sequencing |
| GIS PET RNA |
| Gene Identification Signature Paired-End Tags of PolyA+ RNA |
| GIS RNA-seq |
| ENCODE Genome Institute of Singapore RNA-seq |
| GNF Atlas 2 |
| GNF Expression Atlas 2 |
| GNF Ratio |
| GNF Gene Expression Atlas Ratios Using Affymetrix GeneChips |
| Helicos RNA-seq |
| ENCODE Helicos RNA-seq |
| HudsonAlpha RNA-seq |
| ENCODE HudsonAlpha RNA-seq |
| Illumina WG-6 |
| Alignments of Illumina WG-6 3.0 Probe Set |
| RIKEN CAGE Loc |
| ENCODE RIKEN RNA Subcellular Localization by CAGE Tags |
| Sestan Brain |
| Sestan Lab Human Brain Atlas Microarrays |
| UW Affy Exon |
| ENCODE UW Affy All-Exon Arrays |
|
|
|
|
|---|
| ENCODE Regulation |
| ENCODE Integrated Regulation |
| Txn Factor ChIP |
| ENCODE Transcription Factor ChIP-seq |
| DNase Clusters |
| ENCODE Digital DNaseI Hypersensitivity Clusters |
| Layered H3K4Me3 |
| ENCODE Promoter-Associated Histone Mark (H3K4Me3) on 9 Cell Lines |
| Enhanced H3K27Ac |
| ENCODE Enhancer- and Promoter-Associated Histone Mark (H3K27Ac) on 8 Cell Lines |
| Layered H3K4Me1 |
| ENCODE Enhancer- and Promoter-Associated Histone Mark (H3K4Me1) on 8 Cell Lines |
| Transcription |
| ENCODE Transcription Levels Assayed by RNA-seq on 6 Cell Lines |
| 7X Reg Potential |
| ESPERR Regulatory Potential (7 Species) |
| Broad ChromHMM |
| ENCODE Chromatin State Segmentation by HMM from Broad Institute, MIT and MGH |
| Broad Histone |
| ENCODE Histone Modifications by Broad Institute ChIP-seq |
| CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
| Unmasked CpG |
| CpG Islands on All Sequence (Islands < 300 Bases are Light Green) |
| CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
| EIO/JCVI NAS |
| Eur. Inst. Oncology/J. C. Venter Inst. Nuclease Accessible Sites |
| Eponine TSS |
| Eponine Predicted Transcription Start Sites |
| FirstEF |
| FirstEF: First-Exon and Promoter Prediction |
| FOX2 CLIP-seq |
| FOX2 Adaptor-trimmed CLIP-seq reads |
| GIS ChIP-PET |
| GIS ChIP-PET |
| HAIB Methyl-seq |
| ENCODE HudsonAlpha Methyl-seq |
| HAIB Methyl27 |
| ENCODE HudsonAlpha CpG Methylation by Illumina Methyl27 |
| LI/UCSD TAF1 |
| Ludwig Institute/UC San Diego TAF1 Binding in Fibroblasts |
| LI TAF1 Valid |
| Ludwig Institute ChIP-chip Validation: TAF1 in IMR90 cells |
| LI TAF1 Sites |
| Ludwig Institute NimbleGen ChIP-chip Sites: TAF1 antibody, IMR90 cells |
| LI TAF1 Signal |
| Ludwig Institute NimbleGen ChIP-chip Signal: TAF1 antibody, IMR90 cells |
| NHGRI Bi-Pro |
| ENCODE NHGRI Elnitski Bidirectional Promoters |
| NHGRI NRE |
| ENCODE NHGRI Elnitski Negative Regulatory Elements |
| NKI Nuc Lamina |
| NKI Nuclear Lamina Associated Domains (LaminB1 DamID) |
| NKI LADs (Tig3) |
| NKI LADs (Lamina Associated Domains, Tig3 cells) |
| LaminB1 (Tig3) |
| NKI LaminB1 DamID Map (log2-ratio scores, Tig3 cells) |
| Nucleosome Occupancy |
| UW Predicted Nucleosome Occupancy |
| Nucl Occ: MEC |
| UW Predicted Nucleosome Occupancy - MEC |
| Nucl Occ: Dennis |
| UW Predicted Nucleosome Occupancy - Dennis |
| Nucl Occ: A375 |
| UW Predicted Nucleosome Occupancy - A375 |
| Open Chromatin |
| ENCODE Open Chromatin, Duke/UNC/UT |
| ORegAnno |
| Regulatory elements from ORegAnno |
| SUNY RBP |
| ENCODE SUNY Albany RNA Binding Proteins by RIP-chip |
| SwitchGear TSS |
| SwitchGear Genomics Transcription Start Sites |
| TFBS Conserved |
| HMR Conserved Transcription Factor Binding Sites |
| TS miRNA sites |
| TargetScan miRNA Regulatory Sites |
| UCSF Brain Methyl |
| UCSF Brain DNA Methylation |
| Uppsala ChIP |
| Uppsala University ChIP-chip |
| UU ChIP Sites |
| Uppsala University ChIP-chip Sites |
| UU ChIP Signal |
| Uppsala University ChIP-chip Signal |
| UW DNase DGF |
| ENCODE Univ. Washington Digital DNase Genomic Footprinting |
| UW DNaseI HS |
| ENCODE Univ. Washington DNaseI Hypersensitivity by Digital DNaseI |
| UW Histone |
| ENCODE Histone Modifications by Univ. Washington ChIP-seq |
| Vista Enhancers |
| Vista HMR-Conserved Non-coding Human Enhancers from LBNL |
| Yale TFBS |
| ENCODE Transcription Factor Binding Sites by ChIP-seq from Yale/UC-Davis/Harvard |
|
|
|
|
|---|
| Conservation |
| Vertebrate Multiz Alignment & Conservation (44 Species) |
| 17-Way Cons |
| Vertebrate Multiz Alignment & Conservation (17 Species) |
| 17-Way Most Cons |
| PhastCons Conserved Elements, 17-way Vertebrate Multiz Alignment |
| 28-Way Base Cons |
| Basewise Conservation by PhyloP for 28-Species Multiz Align. |
| 28-Way Cons |
| Vertebrate Multiz Alignment & PhastCons Conservation (28 Species) |
| 28-Way Most Cons |
| PhastCons Conserved Elements, 28-way Vertebrate Multiz Alignment |
| Cons Indels MmCf |
| Indel-based Conservation for human hg18, mouse mm8 and dog canFam2 |
| Evo Cpg |
| Weizmann Evolutionary CpG Islands |
| phastBias gBGC |
| phastBias gBGC predictions |
| Chimp Chain/Net |
| Chimp (Mar. 2006 (CGSC 2.1/panTro2)), Chain and Net Alignments |
| Orangutan Chain/Net |
| Orangutan (July 2007 (WUGSC 2.0.2/ponAbe2)), Chain and Net Alignments |
| Rhesus Chain/Net |
| Rhesus (Jan. 2006 (MGSC Merged 1.0/rheMac2)), Chain and Net Alignments |
| Marmoset Chain/Net |
| Marmoset (June 2007 (WUGSC 2.0.2/calJac1)), Chain and Net Alignments |
| Guinea pig Chain/Net |
| Guinea pig (Feb. 2008 (Broad/cavPor3)), Chain and Net Alignments |
| Rat Chain/Net |
| Rat (Nov. 2004 (Baylor 3.4/rn4)), Chain and Net Alignments |
| Mouse Chain/Net |
| Mouse (July 2007 (NCBI37/mm9)), Chain and Net Alignments |
| Dog Chain/Net |
| Dog (May 2005 (Broad/canFam2)), Chain and Net Alignments |
| Cat Chain/Net |
| Cat (Mar. 2006 (Broad/felCat3)), Chain and Net Alignments |
| Horse Chain/Net |
| Horse (Jan. 2007 (Broad/equCab1)), Chain and Net Alignments |
| bosTau4 Chain/Net |
| Cow (Oct. 2007 (Baylor 4.0/bosTau4)), Chain and Net Alignments |
| Tenrec Chain/Net |
| Tenrec (July 2005 (Broad/echTel1)), Chain and Net Alignments |
| Opossum Chain/Net |
| Opossum (Jan. 2006 (Broad/monDom4)), Chain and Net Alignments |
| Platypus Chain/Net |
| Platypus (Mar. 2007 (WUGSC 5.0.1/ornAna1)), Chain and Net Alignments |
| Lizard Chain/Net |
| Lizard (Feb. 2007 (Broad/anoCar1)), Chain and Net Alignments |
| Chicken Chain/Net |
| Chicken (May 2006 (WUGSC 2.1/galGal3)), Chain and Net Alignments |
| Zebra finch Chain/Net |
| Zebra finch (Jul. 2008 (WUGSC 3.2.4/taeGut1)), Chain and Net Alignments |
| xenTro2 Chain/Net |
| X. tropicalis (Aug. 2005 (JGI 4.1/xenTro2)), Chain and Net Alignments |
| Zebrafish Chain/Net |
| Zebrafish (July 2007 (Zv7/danRer5)), Chain and Net Alignments |
| Stickleback Chain/Net |
| Stickleback (Feb. 2006 (Broad/gasAcu1)), Chain and Net Alignments |
| Medaka Chain/Net |
| Medaka (Oct. 2005 (NIG/UT MEDAKA1/oryLat2)), Chain and Net Alignments |
| Fugu Chain/Net |
| Fugu (Oct. 2004 (JGI 4.0/fr2)), Chain and Net Alignments |
| Tetraodon Chain/Net |
| Tetraodon (Feb. 2004 (Genoscope 7/tetNig1)), Chain and Net Alignments |
| Tetraodon Ecores |
| Human(hg18)/Tetraodon (Feb. 2004 (Genoscope 7/tetNig1)) Evolutionary Conserved Regions |
| Lamprey Chain/Net |
| Lamprey (Mar. 2007 (WUGSC 3.0/petMar1)), Chain and Net Alignments |
| Lancelet Chain/Net |
| Lancelet (Mar. 2006 (JGI 1.0/braFlo1)), Chain and Net Alignments |
| S. purpuratus Chain/Net |
| S. purpuratus (Sep. 2006 (Baylor 2.1/strPur2)), Chain and Net Alignments |
|
|
|
|
|---|
| 5% Lowest S |
| Selective Sweep Scan (S): 5% Smallest S scores |
| Cand. Gene Flow |
| Candidate Regions for Gene Flow from Neandertal to Non-African Modern Humans |
| H-C Coding Diffs |
| Neandertal Alleles in Human/Chimp Coding Non-synonymous Differences in Human Lineage |
| Modern Human Seq |
| Alignments of Sequence Reads from 5 Modern Humans |
| Neandertal Cntgs |
| Neandertal Sequence Contigs Generated by Genotype Caller |
| Neandertal Mito |
| Neandertal Mitochondrial Sequence (Vi33.16, 2008) |
| Neandertal Seq |
| Neandertal Sequence Reads |
| S SNPs |
| SNPS Used for Selective Sweep Scan (S) |
| Sel Swp Scan (S) |
| Selective Sweep Scan (S) on Neandertal vs. Human Polymorphisms (Z-Score +- Variance) |
|
|
|
|
|---|
| Denisova |
| Denisova Sequence Reads |
| Modern Human Seq |
| Alignments of Sequence Reads from 7 Humans |
|
|
|
|
|---|
| RepeatMasker |
| Repeating Elements by RepeatMasker |
| SNPs (130) |
| Simple Nucleotide Polymorphisms (dbSNP build 130) |
| Agilent Array |
| Agilent Microarray Probesets |
| Common Cell CNV |
| ENCODE Common Cell Type Copy Number Variation, by Illumina 1M and CBS |
| DGV Struct Var |
| Database of Genomic Variants: Structural Variation (CNV, Inversion, In/del) |
| Exapted Repeats |
| Repeats Exapted as Conserved Non-Exonic Elements |
| Genome Variants |
| Personal Genome Variants |
| GIS DNA PET |
| ENCODE Genome Institute of Singapore DNA Paired-End Ditags |
| HapMap LD Phased |
| HapMap Linkage Disequilibrium - Phase II - from Phased Genotypes |
| HapMap SNPs |
| HapMap SNPs (rel27, merged Phase II + Phase III genotypes) |
| HGDP Allele Freq |
| Human Genome Diversity Project SNP Population Allele Frequencies |
| HGDP Hetrzygsty |
| Human Genome Diversity Project Smoothed Expected Heterozygosity on 7 Continents |
| HGDP iHS |
| Human Genome Diversity Project Integrated Haplotype Score on 7 Continents |
| HGDP Smoothd FST |
| Human Genome Diversity Project Smoothed Relative FST (Fixation Index) |
| HGDP XP-EHH |
| Human Genome Diversity Proj Cross-Pop Ext Haplo Homzgty (XP-EHH) on 7 Continents |
| HGSV Discordant |
| HGSV Discordant Clone End Alignments |
| Interrupted Rpts |
| Fragments of Interrupted Repeats Joined by RepeatMasker ID |
| Intr Rpts 3.2.7 |
| Fragments of Interrupted Repeats Joined by RepeatMasker ID (RM version 3.2.7) |
| Microsatellite |
| Microsatellites - Di-nucleotide and Tri-nucleotide Repeats |
| NumtS Sequence |
| Human NumtS mitochondrial sequence |
| RepMask 3.2.7 |
| Repeating Elements by RepeatMasker version 3.2.7 |
| Segmental Dups |
| Duplications of >1000 Bases of Non-RepeatMasked Sequence |
| Self Chain |
| Human Chained Self Alignments |
| Simple Repeats |
| Simple Tandem Repeats by TRF |
| SNPs (126) |
| Simple Nucleotide Polymorphisms (dbSNP build 126) |
| SNPs (128) |
| Simple Nucleotide Polymorphisms (dbSNP build 128) |
| SNPs (129) |
| Simple Nucleotide Polymorphisms (dbSNP build 129) |
| Structural Var |
| Structural Variation |
| Tajima's D |
| Tajima's D (from Human May 2004 assembly) |
| Tajima's D SNPs |
| Tajima's D SNPs (from Human May 2004 assembly) |
|
|
|
|
|---|
| EGASP |
| ENCODE Gene Prediction Workshop (EGASP) |
| EGASP Update |
| ENCODE Gene Prediction Workshop (EGASP) Updates |
| EGASP Partial |
| ENCODE Gene Prediction Workshop (EGASP) for Partial ENCODE Regions |
| EGASP Full |
| ENCODE Gene Prediction Workshop (EGASP) All ENCODE Regions |
| ENCODE Regions |
| Encyclopedia of DNA Elements (ENCODE) Regions |
| Gencode Genes |
| Gencode Gene Annotation |
| Gencode Introns Oct05 |
| Gencode Intron Validation (October 2005) |
| Gencode Genes Oct05 |
| Gencode Gene Annotations (October 2005) |
| Gencode RACEfrags |
| 5' RACE-Array experiments on Gencode loci |
| Gencode Genes Mar07 |
| Gencode Gene Annotations (March 2007) |
| Known+Pred RNA |
| Known and Predicted RNA Transcription in the ENCODE Regions |
| Pseudogenes |
| ENCODE Pseudogene Predictions - All ENCODE Regions |
| Vienna RNAz |
| University of Vienna RNA secondary structure predicted by RNAz |
|
|
|
|
|---|
| Affy EC |
| Affymetrix ENCODE Extension Transcription |
| Affy EC Signal |
| Affymetrix ENCODE Extension Transcription Signal |
| Affy EC Sites |
| Affymetrix ENCODE Extension Transcription Sites |
| Affy RNA |
| Affymetrix PolyA+ RNA |
| Affy Transfrags |
| Affymetrix PolyA+ RNA Transfrags |
| Affy RNA Signal |
| Affymetrix PolyA+ RNA Signal |
| BU First Exon |
| Boston University First Exon Activity |
| Riken CAGE |
| Riken CAGE - Predicted Gene Start Sites |
| Stanf Promoter |
| Stanford Promoter Activity |
| Stanf RTPCR |
| Stanford Endogenous Transcript Levels in HCT116 Cells |
| Yale RNA |
| Yale RNA (Neutrophil, Placenta and NB4 cells) |
| Yale TAR |
| Yale RNA Transcriptionally Active Regions (TARs) |
| Yale RNA |
| Yale RNA Transcript Map (Neutrophil, Placenta and NB4 cells) |
| Yale MAS TAR |
| Yale Maskless Array Synthesizer, RNA Transcriptionally Active Regions |
| Yale MAS RNA |
| Yale Maskless Array Synthesizer, RNA Transcript Map |
|
|
|
|
|---|
| Affy ChIP |
| Affymetrix ChIP-chip |
| Affy Strict Sites |
| Affymetrix ChIP-chip (HL-60 and ME-180 cells) Strict Sites |
| Affy Strict Sig |
| Affymetrix ChIP-chip (HL-60 and ME-180 cells) Strict Signal |
| Affy Strict pVal |
| Affymetrix ChIP-chip (HL-60 and ME-180 cells) Strict P-Value |
| Affy Sites |
| Affymetrix ChIP-chip (retinoic acid-treated HL-60 cells) Sites |
| Affy pVal |
| Affymetrix ChIP-chip (retinoic acid-treated HL-60 cells) P-Value |
| LI/UCSD ChIP |
| Ludwig Institute/UC San Diego ChIP-chip |
| LI Ng gIF ChIP |
| Ludwig Institute/UCSD ChIP-chip NimbleGen - Gamma Interferon Experiments |
| LI gIF ChIP |
| Ludwig Institute/UCSD ChIP-chip - Gamma Interferon Experiments |
| LI ChIP Various |
| Ludwig Institute/UCSD ChIP-chip: Pol2 8WG16, TAF1, H3ac, H3K4me2, H3K27me3 antibodies |
| Sanger ChIP-chip |
| Sanger ChIP-chip (histones H3,H4 ab in GM06990, K562, HeLa, HFL-1, MOLT4, and PTR8 cells) |
| Sanger ChIP Hits |
| Sanger ChIP-chip Hits and Peak Centers |
| Sanger ChIP |
| Sanger ChIP-chip (histones H3,H4 ab in GM06990, K562, HeLa, and other cells) |
| Stanf ChIP |
| Stanford ChIP-chip |
| Stanf ChIP Score |
| Stanford ChIP-chip Smoothed Score |
| Stanf ChIP |
| Stanford ChIP-chip (HCT116, Jurkat, K562 cells; Sp1, Sp3 ChIP) |
| UC Davis ChIP |
| UC Davis ChIP-chip NimbleGen (E2F1, c-Myc, TAF, POLII) |
| UCD Ng ChIP Hits |
| UC Davis ChIP-chip Hits NimbleGen (E2F1, Myc ab, HeLa Cells) |
| UCD Ng ChIP |
| UC Davis ChIP-chip NimbleGen (E2F1, c-Myc, TAF, POLII) |
| Uppsala ChIP |
| Uppsala University, Sweden ChIP-chip |
| Uppsala ChIP Buty |
| Uppsala University, Sweden ChIP-chip Na-butyrate time series |
| Uppsala ChIP |
| Uppsala University, Sweden ChIP-chip |
| UT-Austin ChIP |
| University of Texas, Austin ChIP-chip and STAGE |
| UT-Austin STAGE |
| University of Texas, Austin STAGE (Sequence Tag Analysis of Genomic Enrichment) |
| UT-Austin ChIP |
| University of Texas, Austin ChIP-chip |
| Yale ChIP |
| Yale ChIP-chip |
| Yale ChIP RFBR |
| Yale ChIP-chip Regulatory Factor Binding Regions Analysis |
| Yale ChIP Sites |
| Yale ChIP-chip Sites |
| Yale ChIP Signal |
| Yale ChIP-chip Signal |
| Yale ChIP pVal |
| Yale ChIP-chip P-Value |
| Yale STAT1 Sites |
| Yale ChIP-chip (STAT1 ab, HeLa cells) Binding Sites |
| Yale STAT1 Sig |
| Yale ChIP-chip (STAT1 ab, HeLa cells) Signal |
| Yale STAT1 pVal |
| Yale ChIP-chip (STAT1 ab, HeLa cells) P-Value |
|
|
|
|
|---|
| BU ORChID |
| Boston University ORChID 2007 (OH Radical Cleavage Intensity Database) |
| Duke/NHGRI DNase |
| Duke/NHGRI DNaseI Hypersensitivity |
| UNC FAIRE |
| UNC FAIRE (Formaldehyde Assisted Isolation of Regulatory Elements) |
| UVa DNA Rep |
| University of Virginia DNA Replication Timing and Origins |
| UVa DNA Rep TR50 |
| University of Virginia DNA Smoothed Timing at 50% Replication |
| UVa DNA Rep Ori |
| University of Virginia DNA Replication Origins |
| UVa DNA Rep Seg |
| University of Virginia DNA Replication Temporal Segmentation |
| UVa DNA Rep |
| University of Virginia Temporal Profiling of DNA Replication |
| UW DNase |
| UW DNaseI Hypersensitivity |
| UW DNase-array |
| UW DNaseI Hypersensitivity by DNase-array |
| UW DNase-QCP |
| UW DNaseI Sensitivity by QCP |
|
|
|
|
|---|
| 36-Way TBA |
| TBA Alignments and Conservation of 36 Vertebrates in the ENCODE Regions |
| NHGRI DIPs |
| NHGRI Deletion/Insertion Polymorphisms in ENCODE regions |
|
|