Human hg38 chr7:155,799,529-155,812,871 UCSC Genome Browser v504

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Configure Tracks on UCSC Genome Browser: Human Dec. 2013 (GRCh38/hg38)

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Hub: ENCODE DNA Trackhub

ATAC-seq

DNase-seq

Experiments by Ontology

vein

blood vessel, epithelium, vasculature, vein

vasculature

blood vessel, endocrine gland, epithelium, exocrine gland, liver, vasculature

vagina

uterus

blood vessel, epithelium, uterus, vasculature

urinary bladder

blood vessel, epithelium, urinary bladder, vasculature

unknown

tongue

mouth, tongue

thyroid gland

endocrine gland, thyroid gland

testis

gonad, testis

stomach

musculature of body, stomach

spleen

immune organ, spleen

spinal cord

small intestine

intestine, small intestine

skin of body

connective tissue, epithelium, skin of body

prostate gland

placenta

connective tissue, embryo, epithelium, extraembryonic component, placenta

penis

connective tissue, epithelium, penis, skin of body

pancreas

epithelium, exocrine gland, pancreas

musculature of body

arterial blood vessel, blood vessel, connective tissue, epithelium, esophagus, musculature of body, vasculature

mouth

connective tissue, mouth

mammary gland

epithelium, exocrine gland, mammary gland

lymphoid tissue

intestine, lymphoid tissue

lymph node

blood, bodily fluid, bone element, bone marrow, immune organ, lymph node

lung

connective tissue, epithelium, lung, vasculature

liver

connective tissue, endocrine gland, epithelium, exocrine gland, liver

limb

arterial blood vessel, blood vessel, bone element, connective tissue, limb, musculature of body, nerve, skeleton, skin of body, vasculature

large intestine

colon, epithelium, intestine, large intestine

kidney

blood vessel, epithelium, kidney, ureter, vasculature

intestine

colon, intestine, large intestine, musculature of body

immune organ

immune organ, spleen

heart

arterial blood vessel, blood vessel, connective tissue, epithelium, heart, musculature of body, pericardium, vasculature

gonad

epithelium, gonad, ovary, testis

eye

connective tissue, eye

extraembryonic component

exocrine gland

connective tissue, epithelium, exocrine gland, mammary gland, mouth

esophagus

epithelium, esophagus, musculature of body

epithelium

blood vessel, bone element, breast, connective tissue, epithelium, exocrine gland, extraembryonic component, eye, lymphatic vessel, mammary gland, nose, prostate gland, skin of body, vasculature

endocrine gland

adrenal gland, endocrine gland, epithelium, exocrine gland, immune organ, liver, thymus

embryo

embryo, extraembryonic component

connective tissue

connective tissue, extraembryonic component, lung, penis

colon

colon, epithelium, intestine, large intestine

bronchus

bronchus, connective tissue, epithelium, lung

brain

blood vessel, brain, connective tissue, epithelium, vasculature

bone marrow

bone element, bone marrow, connective tissue, epithelium

bone element

bodily fluid

blood, bodily fluid

blood

blood, bodily fluid, bone element, bone marrow

arterial blood vessel

arterial blood vessel, blood vessel, connective tissue, epithelium, vasculature

adrenal gland

adrenal gland, endocrine gland

adipose tissue

adipose tissue, connective tissue

Histone ChIP-seq (by biosample)

Histone ChIP-seq (by biosample) WI38

Histone ChIP-seq (by biosample) WERI-Rb-1

Histone ChIP-seq (by biosample) VCaP

Histone ChIP-seq (by biosample) vagina

Histone ChIP-seq (by biosample) uterus

Histone ChIP-seq (by biosample) upper lobe of left lung

Histone ChIP-seq (by biosample) transverse colon

Histone ChIP-seq (by biosample) tibial nerve

Histone ChIP-seq (by biosample) tibial artery

Histone ChIP-seq (by biosample) thyroid gland

Histone ChIP-seq (by biosample) thoracic aorta

Histone ChIP-seq (by biosample) testis

Histone ChIP-seq (by biosample) T-helper 17 cell

Histone ChIP-seq (by biosample) T-cell

Histone ChIP-seq (by biosample) suprapubic skin

Histone ChIP-seq (by biosample) substantia nigra

Histone ChIP-seq (by biosample) SU-DHL-6

Histone ChIP-seq (by biosample) stomach

Histone ChIP-seq (by biosample) spleen

Histone ChIP-seq (by biosample) skeletal muscle satellite cell

Histone ChIP-seq (by biosample) skeletal muscle myoblast

Histone ChIP-seq (by biosample) skeletal muscle cell

Histone ChIP-seq (by biosample) SK-N-SH

Histone ChIP-seq (by biosample) SK-N-MC

Histone ChIP-seq (by biosample) sigmoid colon

Histone ChIP-seq (by biosample) RWPE2

Histone ChIP-seq (by biosample) RWPE1

Histone ChIP-seq (by biosample) right lobe of liver

Histone ChIP-seq (by biosample) right atrium auricular region

Histone ChIP-seq (by biosample) retinal pigment epithelial cell

Histone ChIP-seq (by biosample) psoas muscle

Histone ChIP-seq (by biosample) prostate gland

Histone ChIP-seq (by biosample) Peyer's patch

Histone ChIP-seq (by biosample) PC-9

Histone ChIP-seq (by biosample) PC-3

Histone ChIP-seq (by biosample) parathyroid adenoma

Histone ChIP-seq (by biosample) pancreas

Histone ChIP-seq (by biosample) Panc1

Histone ChIP-seq (by biosample) ovary

Histone ChIP-seq (by biosample) osteoblast

Histone ChIP-seq (by biosample) OCI-LY7

Histone ChIP-seq (by biosample) OCI-LY3

Histone ChIP-seq (by biosample) OCI-LY1

Histone ChIP-seq (by biosample) NT2/D1

Histone ChIP-seq (by biosample) neutrophil

Histone ChIP-seq (by biosample) NCI-H929

Histone ChIP-seq (by biosample) naive thymus-derived CD4-positive, alpha-beta T cell

Histone ChIP-seq (by biosample) myotube

Histone ChIP-seq (by biosample) muscle layer of colon

Histone ChIP-seq (by biosample) mononuclear cell

Histone ChIP-seq (by biosample) MM.1S

Histone ChIP-seq (by biosample) mesenchymal cell

Histone ChIP-seq (by biosample) MCF-7

Histone ChIP-seq (by biosample) mammary epithelial cell

Histone ChIP-seq (by biosample) lower leg skin

Histone ChIP-seq (by biosample) Loucy

Histone ChIP-seq (by biosample) LNCaP clone FGC

Histone ChIP-seq (by biosample) liver

Histone ChIP-seq (by biosample) KOPT-K1

Histone ChIP-seq (by biosample) KMS-11

Histone ChIP-seq (by biosample) kidney epithelial cell

Histone ChIP-seq (by biosample) keratinocyte

Histone ChIP-seq (by biosample) Karpas-422

Histone ChIP-seq (by biosample) K562

Histone ChIP-seq (by biosample) Jurkat clone E61

Histone ChIP-seq (by biosample) iPS-20b

Histone ChIP-seq (by biosample) iPS-18c

Histone ChIP-seq (by biosample) iPS DF 6.9

Histone ChIP-seq (by biosample) iPS DF 19.11

Histone ChIP-seq (by biosample) HL-60

Histone ChIP-seq (by biosample) HFF-Myc

Histone ChIP-seq (by biosample) HepG2

Histone ChIP-seq (by biosample) HeLa-S3

Histone ChIP-seq (by biosample) heart left ventricle

Histone ChIP-seq (by biosample) HCT116

Histone ChIP-seq (by biosample) GM23338

Histone ChIP-seq (by biosample) GM23248

Histone ChIP-seq (by biosample) GM12878

Histone ChIP-seq (by biosample) GM12865

Histone ChIP-seq (by biosample) GM12864

Histone ChIP-seq (by biosample) GM08714

Histone ChIP-seq (by biosample) GM06990

Histone ChIP-seq (by biosample) gastroesophageal sphincter

Histone ChIP-seq (by biosample) gastrocnemius medialis

Histone ChIP-seq (by biosample) foreskin melanocyte

Histone ChIP-seq (by biosample) foreskin keratinocyte

Histone ChIP-seq (by biosample) foreskin fibroblast

Histone ChIP-seq (by biosample) fibroblast of villous mesenchyme

Histone ChIP-seq (by biosample) fibroblast of the aortic adventitia

Histone ChIP-seq (by biosample) fibroblast of pulmonary artery

Histone ChIP-seq (by biosample) fibroblast of mammary gland

Histone ChIP-seq (by biosample) fibroblast of lung

Histone ChIP-seq (by biosample) fibroblast of dermis

Histone ChIP-seq (by biosample) esophagus squamous epithelium

Histone ChIP-seq (by biosample) esophagus muscularis mucosa

Histone ChIP-seq (by biosample) epithelial cell of proximal tubule

Histone ChIP-seq (by biosample) epithelial cell of prostate

Histone ChIP-seq (by biosample) epithelial cell of esophagus

Histone ChIP-seq (by biosample) endothelial cell of umbilical vein

Histone ChIP-seq (by biosample) embryonic UCSF-4

Histone ChIP-seq (by biosample) embryonic trophoblast cell

Histone ChIP-seq (by biosample) embryonic neural stem progenitor cell

Histone ChIP-seq (by biosample) embryonic neural cell

Histone ChIP-seq (by biosample) embryonic mesodermal cell

Histone ChIP-seq (by biosample) embryonic mesendoderm

Histone ChIP-seq (by biosample) embryonic mesenchymal cell

Histone ChIP-seq (by biosample) embryonic HUES64

Histone ChIP-seq (by biosample) embryonic HUES6

Histone ChIP-seq (by biosample) embryonic HUES48

Histone ChIP-seq (by biosample) embryonic HEK293

Histone ChIP-seq (by biosample) embryonic H7

Histone ChIP-seq (by biosample) embryonic H1

Histone ChIP-seq (by biosample) embryonic ES-I3

Histone ChIP-seq (by biosample) embryonic endodermal cell

Histone ChIP-seq (by biosample) embryonic ectodermal cell

Histone ChIP-seq (by biosample) embryonic cardiovascular progenitor cell

Histone ChIP-seq (by biosample) embryonic cardiac myoblast

Histone ChIP-seq (by biosample) embryonic cardiac muscle cell

Histone ChIP-seq (by biosample) effector memory CD4-positive, alpha-beta T cell

Histone ChIP-seq (by biosample) e5 day smooth muscle cell

Histone ChIP-seq (by biosample) e5 day radial glial cell

Histone ChIP-seq (by biosample) e5 day neuron

Histone ChIP-seq (by biosample) e5 day neuroepithelial stem cell

Histone ChIP-seq (by biosample) e5 day neural stem progenitor cell

Histone ChIP-seq (by biosample) e5 day neural progenitor cell

Histone ChIP-seq (by biosample) e5 day mid-neurogenesis radial glial cells

Histone ChIP-seq (by biosample) e5 day hepatocyte

Histone ChIP-seq (by biosample) e5 day H9

Histone ChIP-seq (by biosample) e17 week brain

Histone ChIP-seq (by biosample) e16 week IMR-90

Histone ChIP-seq (by biosample) e12 week AG04450

Histone ChIP-seq (by biosample) e12 week AG04449

Histone ChIP-seq (by biosample) e110 day thymus

Histone ChIP-seq (by biosample) e110 day muscle of leg

Histone ChIP-seq (by biosample) e108 day large intestine

Histone ChIP-seq (by biosample) DOHH2

Histone ChIP-seq (by biosample) DND-41

Histone ChIP-seq (by biosample) coronary artery

Histone ChIP-seq (by biosample) common myeloid progenitor, CD34-positive

Histone ChIP-seq (by biosample) choroid plexus epithelial cell

Histone ChIP-seq (by biosample) CD8-positive, alpha-beta T cell

Histone ChIP-seq (by biosample) CD8-positive, alpha-beta memory T cell

Histone ChIP-seq (by biosample) CD4-positive, CD25-positive, alpha-beta regulatory T cell

Histone ChIP-seq (by biosample) CD4-positive, alpha-beta T cell

Histone ChIP-seq (by biosample) CD4-positive, alpha-beta memory T cell

Histone ChIP-seq (by biosample) CD14-positive monocyte

Histone ChIP-seq (by biosample) cardiac muscle cell

Histone ChIP-seq (by biosample) cardiac fibroblast

Histone ChIP-seq (by biosample) Caco-2

Histone ChIP-seq (by biosample) C4-2B

Histone ChIP-seq (by biosample) bronchial epithelial cell

Histone ChIP-seq (by biosample) breast epithelium

Histone ChIP-seq (by biosample) brain microvascular endothelial cell

Histone ChIP-seq (by biosample) body of pancreas

Histone ChIP-seq (by biosample) BJ

Histone ChIP-seq (by biosample) bipolar neuron

Histone ChIP-seq (by biosample) BE2C

Histone ChIP-seq (by biosample) B cell

Histone ChIP-seq (by biosample) astrocyte of the spinal cord

Histone ChIP-seq (by biosample) astrocyte of the cerebellum

Histone ChIP-seq (by biosample) astrocyte

Histone ChIP-seq (by biosample) AG10803

Histone ChIP-seq (by biosample) AG09319

Histone ChIP-seq (by biosample) AG09309

Histone ChIP-seq (by biosample) adrenal gland

Histone ChIP-seq (by biosample) adipocyte

Histone ChIP-seq (by biosample) ACC112

Histone ChIP-seq (by biosample) A673

Histone ChIP-seq (by biosample) A549

Histone ChIP-seq (by biosample) 22Rv1

Histone ChIP-seq (by target)

Histone ChIP-seq (by target) H4K91ac

Histone ChIP-seq (by target) H4K8ac

Histone ChIP-seq (by target) H4K5ac

Histone ChIP-seq (by target) H4K20me1

Histone ChIP-seq (by target) H4K12ac

Histone ChIP-seq (by target) H3K9me3

Histone ChIP-seq (by target) H3K9me2

Histone ChIP-seq (by target) H3K9me1

Histone ChIP-seq (by target) H3K9ac

Histone ChIP-seq (by target) H3K79me2

Histone ChIP-seq (by target) H3K79me1

Histone ChIP-seq (by target) H3K56ac

Histone ChIP-seq (by target) H3K4me3

Histone ChIP-seq (by target) H3K4me2

Histone ChIP-seq (by target) H3K4me1

Histone ChIP-seq (by target) H3K4ac

Histone ChIP-seq (by target) H3K36me3

Histone ChIP-seq (by target) H3K27me3

Histone ChIP-seq (by target) H3K27ac

Histone ChIP-seq (by target) H3K23me2

Histone ChIP-seq (by target) H3K23ac

Histone ChIP-seq (by target) H3K18ac

Histone ChIP-seq (by target) H3K14ac

Histone ChIP-seq (by target) H3F3A

Histone ChIP-seq (by target) H2BK5ac

Histone ChIP-seq (by target) H2BK20ac

Histone ChIP-seq (by target) H2BK15ac

Histone ChIP-seq (by target) H2BK12ac

Histone ChIP-seq (by target) H2BK120ac

Histone ChIP-seq (by target) H2AK9ac

Histone ChIP-seq (by target) H2AK5ac

Histone ChIP-seq (by target) H2AFZ

TF ChIP-seq (by biosample)

TF ChIP-seq (by biosample) WI38

TF ChIP-seq (by biosample) WERI-Rb-1

TF ChIP-seq (by biosample) VCaP

TF ChIP-seq (by biosample) vagina

TF ChIP-seq (by biosample) uterus

TF ChIP-seq (by biosample) upper lobe of left lung

TF ChIP-seq (by biosample) transverse colon

TF ChIP-seq (by biosample) tibial nerve

TF ChIP-seq (by biosample) tibial artery

TF ChIP-seq (by biosample) thyroid gland

TF ChIP-seq (by biosample) thoracic aorta

TF ChIP-seq (by biosample) testis

TF ChIP-seq (by biosample) T47D

TF ChIP-seq (by biosample) suprapubic skin

TF ChIP-seq (by biosample) SU-DHL-6

TF ChIP-seq (by biosample) stomach

TF ChIP-seq (by biosample) spleen

TF ChIP-seq (by biosample) SK-N-SH

TF ChIP-seq (by biosample) SK-N-MC

TF ChIP-seq (by biosample) sigmoid colon

TF ChIP-seq (by biosample) SH-SY5Y

TF ChIP-seq (by biosample) RWPE2

TF ChIP-seq (by biosample) RWPE1

TF ChIP-seq (by biosample) right atrium auricular region

TF ChIP-seq (by biosample) retinal pigment epithelial cell

TF ChIP-seq (by biosample) prostate gland

TF ChIP-seq (by biosample) PFSK-1

TF ChIP-seq (by biosample) Peyer's patch

TF ChIP-seq (by biosample) PC-9

TF ChIP-seq (by biosample) PC-3

TF ChIP-seq (by biosample) pancreas

TF ChIP-seq (by biosample) Panc1

TF ChIP-seq (by biosample) osteoblast

TF ChIP-seq (by biosample) OCI-LY7

TF ChIP-seq (by biosample) OCI-LY3

TF ChIP-seq (by biosample) OCI-LY1

TF ChIP-seq (by biosample) NT2/D1

TF ChIP-seq (by biosample) neutrophil

TF ChIP-seq (by biosample) NCI-H929

TF ChIP-seq (by biosample) myotube

TF ChIP-seq (by biosample) MM.1S

TF ChIP-seq (by biosample) MCF-7

TF ChIP-seq (by biosample) MCF 10A

TF ChIP-seq (by biosample) mammary epithelial cell

TF ChIP-seq (by biosample) lung

TF ChIP-seq (by biosample) Loucy

TF ChIP-seq (by biosample) LNCaP clone FGC

TF ChIP-seq (by biosample) LNCAP

TF ChIP-seq (by biosample) liver

TF ChIP-seq (by biosample) KMS-11

TF ChIP-seq (by biosample) kidney epithelial cell

TF ChIP-seq (by biosample) keratinocyte

TF ChIP-seq (by biosample) K562

TF ChIP-seq (by biosample) Ishikawa

TF ChIP-seq (by biosample) HL-60

TF ChIP-seq (by biosample) HFF-Myc

TF ChIP-seq (by biosample) HepG2

TF ChIP-seq (by biosample) HeLa-S3

TF ChIP-seq (by biosample) heart left ventricle

TF ChIP-seq (by biosample) HCT116

TF ChIP-seq (by biosample) H54

TF ChIP-seq (by biosample) GM23338

TF ChIP-seq (by biosample) GM20000

TF ChIP-seq (by biosample) GM13977

TF ChIP-seq (by biosample) GM13976

TF ChIP-seq (by biosample) GM12892

TF ChIP-seq (by biosample) GM12891

TF ChIP-seq (by biosample) GM12878

TF ChIP-seq (by biosample) GM12874

TF ChIP-seq (by biosample) GM12873

TF ChIP-seq (by biosample) GM12865

TF ChIP-seq (by biosample) GM12864

TF ChIP-seq (by biosample) GM10266

TF ChIP-seq (by biosample) GM10248

TF ChIP-seq (by biosample) GM08714

TF ChIP-seq (by biosample) GM06990

TF ChIP-seq (by biosample) gastroesophageal sphincter

TF ChIP-seq (by biosample) gastrocnemius medialis

TF ChIP-seq (by biosample) foreskin keratinocyte

TF ChIP-seq (by biosample) foreskin fibroblast

TF ChIP-seq (by biosample) fibroblast of villous mesenchyme

TF ChIP-seq (by biosample) fibroblast of the aortic adventitia

TF ChIP-seq (by biosample) fibroblast of pulmonary artery

TF ChIP-seq (by biosample) fibroblast of mammary gland

TF ChIP-seq (by biosample) fibroblast of lung

TF ChIP-seq (by biosample) fibroblast of dermis

TF ChIP-seq (by biosample) esophagus squamous epithelium

TF ChIP-seq (by biosample) esophagus muscularis mucosa

TF ChIP-seq (by biosample) erythroblast

TF ChIP-seq (by biosample) epithelial cell of proximal tubule

TF ChIP-seq (by biosample) epithelial cell of prostate

TF ChIP-seq (by biosample) epithelial cell of esophagus

TF ChIP-seq (by biosample) endothelial cell of umbilical vein

TF ChIP-seq (by biosample) embryonic neural cell

TF ChIP-seq (by biosample) embryonic HEK293T

TF ChIP-seq (by biosample) embryonic HEK293

TF ChIP-seq (by biosample) embryonic H1

TF ChIP-seq (by biosample) e5 day smooth muscle cell

TF ChIP-seq (by biosample) e5 day neural progenitor cell

TF ChIP-seq (by biosample) e5 day hepatocyte

TF ChIP-seq (by biosample) e16-19 week erythroblast

TF ChIP-seq (by biosample) e16 week IMR-90

TF ChIP-seq (by biosample) e12 week AG04450

TF ChIP-seq (by biosample) e12 week AG04449

TF ChIP-seq (by biosample) DOHH2

TF ChIP-seq (by biosample) DND-41

TF ChIP-seq (by biosample) D721Med

TF ChIP-seq (by biosample) choroid plexus epithelial cell

TF ChIP-seq (by biosample) CD14-positive monocyte

TF ChIP-seq (by biosample) cardiac muscle cell

TF ChIP-seq (by biosample) Caco-2

TF ChIP-seq (by biosample) C4-2B

TF ChIP-seq (by biosample) brain microvascular endothelial cell

TF ChIP-seq (by biosample) body of pancreas

TF ChIP-seq (by biosample) BJ

TF ChIP-seq (by biosample) bipolar neuron

TF ChIP-seq (by biosample) BE2C

TF ChIP-seq (by biosample) B cell

TF ChIP-seq (by biosample) astrocyte of the spinal cord

TF ChIP-seq (by biosample) astrocyte of the cerebellum

TF ChIP-seq (by biosample) astrocyte

TF ChIP-seq (by biosample) AG10803

TF ChIP-seq (by biosample) AG09319

TF ChIP-seq (by biosample) AG09309

TF ChIP-seq (by biosample) adrenal gland

TF ChIP-seq (by biosample) A673

TF ChIP-seq (by biosample) A549

TF ChIP-seq (by biosample) 22Rv1

TF ChIP-seq (by target)

TF ChIP-seq (by target) ZZZ3

TF ChIP-seq (by target) ZXDB

TF ChIP-seq (by target) ZSCAN9

TF ChIP-seq (by target) ZSCAN5C

TF ChIP-seq (by target) ZSCAN5A

TF ChIP-seq (by target) ZSCAN4

TF ChIP-seq (by target) ZSCAN30

TF ChIP-seq (by target) ZSCAN29

TF ChIP-seq (by target) ZSCAN26

TF ChIP-seq (by target) ZSCAN23

TF ChIP-seq (by target) ZSCAN21

TF ChIP-seq (by target) ZSCAN18

TF ChIP-seq (by target) ZSCAN16

TF ChIP-seq (by target) ZNF843

TF ChIP-seq (by target) ZNF837

TF ChIP-seq (by target) ZNF83

TF ChIP-seq (by target) ZNF8

TF ChIP-seq (by target) ZNF792

TF ChIP-seq (by target) ZNF791

TF ChIP-seq (by target) ZNF785

TF ChIP-seq (by target) ZNF781

TF ChIP-seq (by target) ZNF777

TF ChIP-seq (by target) ZNF776

TF ChIP-seq (by target) ZNF770

TF ChIP-seq (by target) ZNF766

TF ChIP-seq (by target) ZNF76

TF ChIP-seq (by target) ZNF747

TF ChIP-seq (by target) ZNF740

TF ChIP-seq (by target) ZNF707

TF ChIP-seq (by target) ZNF704

TF ChIP-seq (by target) ZNF701

TF ChIP-seq (by target) ZNF7

TF ChIP-seq (by target) ZNF697

TF ChIP-seq (by target) ZNF692

TF ChIP-seq (by target) ZNF687

TF ChIP-seq (by target) ZNF680

TF ChIP-seq (by target) ZNF677

TF ChIP-seq (by target) ZNF670

TF ChIP-seq (by target) ZNF664

TF ChIP-seq (by target) ZNF662

TF ChIP-seq (by target) ZNF660

TF ChIP-seq (by target) ZNF658

TF ChIP-seq (by target) ZNF654

TF ChIP-seq (by target) ZNF652

TF ChIP-seq (by target) ZNF645

TF ChIP-seq (by target) ZNF644

TF ChIP-seq (by target) ZNF639

TF ChIP-seq (by target) ZNF629

TF ChIP-seq (by target) ZNF626

TF ChIP-seq (by target) ZNF624

TF ChIP-seq (by target) ZNF623

TF ChIP-seq (by target) ZNF621

TF ChIP-seq (by target) ZNF614

TF ChIP-seq (by target) ZNF610

TF ChIP-seq (by target) ZNF600

TF ChIP-seq (by target) ZNF596

TF ChIP-seq (by target) ZNF592

TF ChIP-seq (by target) ZNF589

TF ChIP-seq (by target) ZNF585B

TF ChIP-seq (by target) ZNF584

TF ChIP-seq (by target) ZNF580

TF ChIP-seq (by target) ZNF577

TF ChIP-seq (by target) ZNF574

TF ChIP-seq (by target) ZNF571

TF ChIP-seq (by target) ZNF561

TF ChIP-seq (by target) ZNF560

TF ChIP-seq (by target) ZNF558

TF ChIP-seq (by target) ZNF555

TF ChIP-seq (by target) ZNF549

TF ChIP-seq (by target) ZNF548

TF ChIP-seq (by target) ZNF547

TF ChIP-seq (by target) ZNF544

TF ChIP-seq (by target) ZNF530

TF ChIP-seq (by target) ZNF529

TF ChIP-seq (by target) ZNF524

TF ChIP-seq (by target) ZNF521

TF ChIP-seq (by target) ZNF518A

TF ChIP-seq (by target) ZNF514

TF ChIP-seq (by target) ZNF513

TF ChIP-seq (by target) ZNF512B

TF ChIP-seq (by target) ZNF512

TF ChIP-seq (by target) ZNF511

TF ChIP-seq (by target) ZNF510

TF ChIP-seq (by target) ZNF507

TF ChIP-seq (by target) ZNF501

TF ChIP-seq (by target) ZNF493

TF ChIP-seq (by target) ZNF491

TF ChIP-seq (by target) ZNF488

TF ChIP-seq (by target) ZNF48

TF ChIP-seq (by target) ZNF473

TF ChIP-seq (by target) ZNF449

TF ChIP-seq (by target) ZNF444

TF ChIP-seq (by target) ZNF433

TF ChIP-seq (by target) ZNF426

TF ChIP-seq (by target) ZNF423

TF ChIP-seq (by target) ZNF416

TF ChIP-seq (by target) ZNF407

TF ChIP-seq (by target) ZNF404

TF ChIP-seq (by target) ZNF398

TF ChIP-seq (by target) ZNF395

TF ChIP-seq (by target) ZNF394

TF ChIP-seq (by target) ZNF391

TF ChIP-seq (by target) ZNF384

TF ChIP-seq (by target) ZNF37A

TF ChIP-seq (by target) ZNF362

TF ChIP-seq (by target) ZNF354C

TF ChIP-seq (by target) ZNF354B

TF ChIP-seq (by target) ZNF350

TF ChIP-seq (by target) ZNF341

TF ChIP-seq (by target) ZNF34

TF ChIP-seq (by target) ZNF331

TF ChIP-seq (by target) ZNF324

TF ChIP-seq (by target) ZNF318

TF ChIP-seq (by target) ZNF316

TF ChIP-seq (by target) ZNF311

TF ChIP-seq (by target) ZNF302

TF ChIP-seq (by target) ZNF300

TF ChIP-seq (by target) ZNF3

TF ChIP-seq (by target) ZNF292

TF ChIP-seq (by target) ZNF282

TF ChIP-seq (by target) ZNF280D

TF ChIP-seq (by target) ZNF280C

TF ChIP-seq (by target) ZNF280A

TF ChIP-seq (by target) ZNF274

TF ChIP-seq (by target) ZNF266

TF ChIP-seq (by target) ZNF263

TF ChIP-seq (by target) ZNF26

TF ChIP-seq (by target) ZNF248

TF ChIP-seq (by target) ZNF24

TF ChIP-seq (by target) ZNF239

TF ChIP-seq (by target) ZNF23

TF ChIP-seq (by target) ZNF223

TF ChIP-seq (by target) ZNF221

TF ChIP-seq (by target) ZNF217

TF ChIP-seq (by target) ZNF214

TF ChIP-seq (by target) ZNF213

TF ChIP-seq (by target) ZNF211

TF ChIP-seq (by target) ZNF205

TF ChIP-seq (by target) ZNF202

TF ChIP-seq (by target) ZNF2

TF ChIP-seq (by target) ZNF197

TF ChIP-seq (by target) ZNF195

TF ChIP-seq (by target) ZNF19

TF ChIP-seq (by target) ZNF189

TF ChIP-seq (by target) ZNF184

TF ChIP-seq (by target) ZNF18

TF ChIP-seq (by target) ZNF175

TF ChIP-seq (by target) ZNF174

TF ChIP-seq (by target) ZNF169

TF ChIP-seq (by target) ZNF16

TF ChIP-seq (by target) ZNF157

TF ChIP-seq (by target) ZNF155

TF ChIP-seq (by target) ZNF148

TF ChIP-seq (by target) ZNF146

TF ChIP-seq (by target) ZNF143

TF ChIP-seq (by target) ZNF140

TF ChIP-seq (by target) ZNF138

TF ChIP-seq (by target) ZNF133

TF ChIP-seq (by target) ZNF132

TF ChIP-seq (by target) ZNF121

TF ChIP-seq (by target) ZNF114

TF ChIP-seq (by target) ZNF112

TF ChIP-seq (by target) ZNF101

TF ChIP-seq (by target) ZNF10

TF ChIP-seq (by target) ZMYM3

TF ChIP-seq (by target) ZMIZ1

TF ChIP-seq (by target) ZKSCAN8

TF ChIP-seq (by target) ZKSCAN1

TF ChIP-seq (by target) ZIK1

TF ChIP-seq (by target) ZIC2

TF ChIP-seq (by target) ZGPAT

TF ChIP-seq (by target) ZFP91

TF ChIP-seq (by target) ZFP69B

TF ChIP-seq (by target) ZFP64

TF ChIP-seq (by target) ZFP41

TF ChIP-seq (by target) ZFP37

TF ChIP-seq (by target) ZFP3

TF ChIP-seq (by target) ZFP1

TF ChIP-seq (by target) ZFHX2

TF ChIP-seq (by target) ZEB2

TF ChIP-seq (by target) ZEB1

TF ChIP-seq (by target) ZC3H8

TF ChIP-seq (by target) ZBTB8A

TF ChIP-seq (by target) ZBTB7B

TF ChIP-seq (by target) ZBTB6

TF ChIP-seq (by target) ZBTB5

TF ChIP-seq (by target) ZBTB49

TF ChIP-seq (by target) ZBTB48

TF ChIP-seq (by target) ZBTB44

TF ChIP-seq (by target) ZBTB40

TF ChIP-seq (by target) ZBTB33

TF ChIP-seq (by target) ZBTB26

TF ChIP-seq (by target) ZBTB25

TF ChIP-seq (by target) ZBTB21

TF ChIP-seq (by target) ZBTB20

TF ChIP-seq (by target) ZBTB2

TF ChIP-seq (by target) ZBTB17

TF ChIP-seq (by target) ZBTB12

TF ChIP-seq (by target) ZBTB11

TF ChIP-seq (by target) ZBTB10

TF ChIP-seq (by target) ZBED5

TF ChIP-seq (by target) ZBED1

TF ChIP-seq (by target) YY2

TF ChIP-seq (by target) YY1

TF ChIP-seq (by target) YBX1

TF ChIP-seq (by target) XRCC5

TF ChIP-seq (by target) WT1

TF ChIP-seq (by target) VEZF1

TF ChIP-seq (by target) USF2

TF ChIP-seq (by target) USF1

TF ChIP-seq (by target) UBTF

TF ChIP-seq (by target) TSHZ1

TF ChIP-seq (by target) TSC22D4

TF ChIP-seq (by target) TRIM28

TF ChIP-seq (by target) TRIM25

TF ChIP-seq (by target) TRIM24

TF ChIP-seq (by target) TRIM22

TF ChIP-seq (by target) THRB

TF ChIP-seq (by target) THRA

TF ChIP-seq (by target) THAP11

TF ChIP-seq (by target) THAP1

TF ChIP-seq (by target) TGIF2

TF ChIP-seq (by target) TFE3

TF ChIP-seq (by target) TFDP1

TF ChIP-seq (by target) TFAP4

TF ChIP-seq (by target) TEAD4

TF ChIP-seq (by target) TEAD3

TF ChIP-seq (by target) TEAD1

TF ChIP-seq (by target) TCF7L2

TF ChIP-seq (by target) TCF7

TF ChIP-seq (by target) TCF12

TF ChIP-seq (by target) TBX3

TF ChIP-seq (by target) TBX21

TF ChIP-seq (by target) TBP

TF ChIP-seq (by target) STAT5A

TF ChIP-seq (by target) STAT3

TF ChIP-seq (by target) STAT2

TF ChIP-seq (by target) STAT1

TF ChIP-seq (by target) SRF

TF ChIP-seq (by target) SREBF2

TF ChIP-seq (by target) SREBF1

TF ChIP-seq (by target) SP7

TF ChIP-seq (by target) SP5

TF ChIP-seq (by target) SP3

TF ChIP-seq (by target) SP2

TF ChIP-seq (by target) SP1

TF ChIP-seq (by target) SOX6

TF ChIP-seq (by target) SOX5

TF ChIP-seq (by target) SOX13

TF ChIP-seq (by target) SMAD5

TF ChIP-seq (by target) SMAD4

TF ChIP-seq (by target) SMAD2

TF ChIP-seq (by target) SMAD1

TF ChIP-seq (by target) SKIL

TF ChIP-seq (by target) SIX5

TF ChIP-seq (by target) SIX4

TF ChIP-seq (by target) SFPQ

TF ChIP-seq (by target) SCRT2

TF ChIP-seq (by target) SCRT1

TF ChIP-seq (by target) SALL2

TF ChIP-seq (by target) SALL1

TF ChIP-seq (by target) RXRB

TF ChIP-seq (by target) RXRA

TF ChIP-seq (by target) RUNX3

TF ChIP-seq (by target) RUNX1

TF ChIP-seq (by target) RNF2

TF ChIP-seq (by target) RLF

TF ChIP-seq (by target) RFX5

TF ChIP-seq (by target) RFX3

TF ChIP-seq (by target) RFX1

TF ChIP-seq (by target) REST

TF ChIP-seq (by target) RELA

TF ChIP-seq (by target) RCOR2

TF ChIP-seq (by target) RBPJ

TF ChIP-seq (by target) RBAK

TF ChIP-seq (by target) PTTG1

TF ChIP-seq (by target) PRDM6

TF ChIP-seq (by target) PRDM4

TF ChIP-seq (by target) PRDM2

TF ChIP-seq (by target) PRDM10

TF ChIP-seq (by target) PRDM1

TF ChIP-seq (by target) PPARG

TF ChIP-seq (by target) POU5F1

TF ChIP-seq (by target) POU2F2

TF ChIP-seq (by target) PKNOX1

TF ChIP-seq (by target) PHB2

TF ChIP-seq (by target) PBX3

TF ChIP-seq (by target) PBX2

TF ChIP-seq (by target) PAX8

TF ChIP-seq (by target) PAX5

TF ChIP-seq (by target) PATZ1

TF ChIP-seq (by target) OVOL3

TF ChIP-seq (by target) OSR2

TF ChIP-seq (by target) NRF1

TF ChIP-seq (by target) NR4A1

TF ChIP-seq (by target) NR3C1

TF ChIP-seq (by target) NR2F6

TF ChIP-seq (by target) NR2F2

TF ChIP-seq (by target) NR2F1

TF ChIP-seq (by target) NR2C2

TF ChIP-seq (by target) NR2C1

TF ChIP-seq (by target) NR0B1

TF ChIP-seq (by target) NKRF

TF ChIP-seq (by target) NFYC

TF ChIP-seq (by target) NFYB

TF ChIP-seq (by target) NFYA

TF ChIP-seq (by target) NFXL1

TF ChIP-seq (by target) NFIL3

TF ChIP-seq (by target) NFIC

TF ChIP-seq (by target) NFIB

TF ChIP-seq (by target) NFIA

TF ChIP-seq (by target) NFE2L2

TF ChIP-seq (by target) NFE2

TF ChIP-seq (by target) NFATC3

TF ChIP-seq (by target) NFATC1

TF ChIP-seq (by target) NEUROD1

TF ChIP-seq (by target) NANOG

TF ChIP-seq (by target) MZF1

TF ChIP-seq (by target) MYRF

TF ChIP-seq (by target) MYNN

TF ChIP-seq (by target) MYC

TF ChIP-seq (by target) MYBL2

TF ChIP-seq (by target) MXI1

TF ChIP-seq (by target) MXD3

TF ChIP-seq (by target) MNT

TF ChIP-seq (by target) MLX

TF ChIP-seq (by target) MLLT1

TF ChIP-seq (by target) MIXL1

TF ChIP-seq (by target) MITF

TF ChIP-seq (by target) MGA

TF ChIP-seq (by target) MEIS2

TF ChIP-seq (by target) MEF2D

TF ChIP-seq (by target) MEF2C

TF ChIP-seq (by target) MEF2B

TF ChIP-seq (by target) MEF2A

TF ChIP-seq (by target) MBD1

TF ChIP-seq (by target) MAZ

TF ChIP-seq (by target) MAX

TF ChIP-seq (by target) MAFK

TF ChIP-seq (by target) MAFG

TF ChIP-seq (by target) MAFF

TF ChIP-seq (by target) LEF1

TF ChIP-seq (by target) LCORL

TF ChIP-seq (by target) KLF9

TF ChIP-seq (by target) KLF8

TF ChIP-seq (by target) KLF7

TF ChIP-seq (by target) KLF6

TF ChIP-seq (by target) KLF5

TF ChIP-seq (by target) KLF4

TF ChIP-seq (by target) KLF17

TF ChIP-seq (by target) KLF16

TF ChIP-seq (by target) KLF14

TF ChIP-seq (by target) KLF13

TF ChIP-seq (by target) KLF11

TF ChIP-seq (by target) KLF10

TF ChIP-seq (by target) KLF1

TF ChIP-seq (by target) KDM6A

TF ChIP-seq (by target) JUND

TF ChIP-seq (by target) JUN

TF ChIP-seq (by target) IRF9

TF ChIP-seq (by target) IRF5

TF ChIP-seq (by target) IRF4

TF ChIP-seq (by target) IRF3

TF ChIP-seq (by target) IRF2

TF ChIP-seq (by target) IRF1

TF ChIP-seq (by target) INSM2

TF ChIP-seq (by target) ILK

TF ChIP-seq (by target) IKZF5

TF ChIP-seq (by target) IKZF3

TF ChIP-seq (by target) IKZF2

TF ChIP-seq (by target) IKZF1

TF ChIP-seq (by target) ID3

TF ChIP-seq (by target) HSF1

TF ChIP-seq (by target) HOMEZ

TF ChIP-seq (by target) HNRNPK

TF ChIP-seq (by target) HNF4G

TF ChIP-seq (by target) HNF4A

TF ChIP-seq (by target) HNF1A

TF ChIP-seq (by target) HMGXB4

TF ChIP-seq (by target) HMG20B

TF ChIP-seq (by target) HMG20A

TF ChIP-seq (by target) HMBOX1

TF ChIP-seq (by target) HLF

TF ChIP-seq (by target) HINFP

TF ChIP-seq (by target) HIC1

TF ChIP-seq (by target) HHEX

TF ChIP-seq (by target) HES1

TF ChIP-seq (by target) HBP1

TF ChIP-seq (by target) GTF2B

TF ChIP-seq (by target) GMEB2

TF ChIP-seq (by target) GMEB1

TF ChIP-seq (by target) GLIS2

TF ChIP-seq (by target) GLIS1

TF ChIP-seq (by target) GLI4

TF ChIP-seq (by target) GLI2

TF ChIP-seq (by target) GFI1B

TF ChIP-seq (by target) GATAD2B

TF ChIP-seq (by target) GATA4

TF ChIP-seq (by target) GATA3

TF ChIP-seq (by target) GATA2

TF ChIP-seq (by target) GATA1

TF ChIP-seq (by target) GABPB1

TF ChIP-seq (by target) GABPA

TF ChIP-seq (by target) FOXP2

TF ChIP-seq (by target) FOXK2

TF ChIP-seq (by target) FOXJ2

TF ChIP-seq (by target) FOXA3

TF ChIP-seq (by target) FOXA2

TF ChIP-seq (by target) FOXA1

TF ChIP-seq (by target) FOSL2

TF ChIP-seq (by target) FOSL1

TF ChIP-seq (by target) FOS

TF ChIP-seq (by target) FEZF1

TF ChIP-seq (by target) ETV6

TF ChIP-seq (by target) ETV5

TF ChIP-seq (by target) ETV4

TF ChIP-seq (by target) ETV1

TF ChIP-seq (by target) ETS2

TF ChIP-seq (by target) ETS1

TF ChIP-seq (by target) ESRRA

TF ChIP-seq (by target) ESR1

TF ChIP-seq (by target) EP300

TF ChIP-seq (by target) ELK1

TF ChIP-seq (by target) ELF4

TF ChIP-seq (by target) ELF1

TF ChIP-seq (by target) EGR2

TF ChIP-seq (by target) EGR1

TF ChIP-seq (by target) EBF1

TF ChIP-seq (by target) E4F1

TF ChIP-seq (by target) E2F8

TF ChIP-seq (by target) E2F7

TF ChIP-seq (by target) E2F6

TF ChIP-seq (by target) E2F5

TF ChIP-seq (by target) E2F4

TF ChIP-seq (by target) E2F1

TF ChIP-seq (by target) DEAF1

TF ChIP-seq (by target) DACH1

TF ChIP-seq (by target) CUX1

TF ChIP-seq (by target) CTCFL

TF ChIP-seq (by target) CTCF

TF ChIP-seq (by target) CREM

TF ChIP-seq (by target) CREB3L1

TF ChIP-seq (by target) CREB3

TF ChIP-seq (by target) CREB1

TF ChIP-seq (by target) CLOCK

TF ChIP-seq (by target) CHD7

TF ChIP-seq (by target) CHAMP1

TF ChIP-seq (by target) CEBPZ

TF ChIP-seq (by target) CEBPG

TF ChIP-seq (by target) CEBPB

TF ChIP-seq (by target) CEBPA

TF ChIP-seq (by target) CDC5L

TF ChIP-seq (by target) CC2D1A

TF ChIP-seq (by target) CBX2

TF ChIP-seq (by target) CBX1

TF ChIP-seq (by target) CBFB

TF ChIP-seq (by target) BHLHE40

TF ChIP-seq (by target) BCLAF1

TF ChIP-seq (by target) BCL6B

TF ChIP-seq (by target) BCL6

TF ChIP-seq (by target) BCL3

TF ChIP-seq (by target) BCL11B

TF ChIP-seq (by target) BCL11A

TF ChIP-seq (by target) BATF

TF ChIP-seq (by target) BACH1

TF ChIP-seq (by target) ATF4

TF ChIP-seq (by target) ATF3

TF ChIP-seq (by target) ATF2

TF ChIP-seq (by target) ATF1

TF ChIP-seq (by target) ARNT

TF ChIP-seq (by target) ARID4B

TF ChIP-seq (by target) ARID3A

TF ChIP-seq (by target) ARHGAP35

TF ChIP-seq (by target) AHR

TF ChIP-seq (by target) AFF1

TF ChIP-seq (by target) AEBP2

TF ChIP-seq (by target) ADNP

whole-genome shotgun bisulfite sequencing

Mapping and Sequencing

Base Position

Chromosome position in bases. (Clicks here zoom in 3x)

p14 Fix Patches

Reference Assembly Fix Patch Sequence Alignments

p14 Alt Haplotypes

Reference Assembly Alternate Haplotype Sequence Alignments

Assembly

Assembly from Fragments

Centromeres

Centromere Locations

Chromosome Band

Chromosome Bands Localized by FISH Mapping Clones

Clone Ends

Mapping of clone libraries end placements

Exome Probesets

Exome Capture Probesets and Targeted Region

FISH Clones

Clones Placed on Cytogenetic Map Using FISH

Gap

Gap Locations

GC Percent

GC Percent in 5-Base Windows

GRC Contigs

Genome Reference Consortium Contigs

GRC Incident

GRC Incident Database

Hg19 Diff

Contigs New to GRCh38/(hg38), Not Carried Forward from GRCh37/(hg19)

INSDC

Accession at INSDC - International Nucleotide Sequence Database Collaboration

LiftOver & ReMap

UCSC LiftOver and NCBI ReMap: Genome alignments to convert annotations to hg19

LRG Regions

Locus Reference Genomic (LRG) / RefSeqGene Sequences Mapped to Dec. 2013 (GRCh38/hg38) Assembly

Mappability

Hoffman Lab Umap and Bismap Mappability

Umap

Single-read and multi-read mappability by Umap

Bismap

Single-read and multi-read mappability after bisulfite conversion

Problematic Regions

Problematic/special genomic regions for sequencing or very variable regions

Problematic Regions

Problematic/special genomic regions for sequencing or very variable regions

Highly Reproducible Regions

Highly Reproducible genomic regions for sequencing

Recomb Rate

Recombination rate: Genetic maps from deCODE and 1000 Genomes

Recomb. 1k Genomes

Recombination rate: 1000 Genomes, lifted from hg19 (PR Loh)

Recomb. deCODE Dmn

Recombination rate: De-novo mutations found in deCODE samples

Recomb. deCODE Evts

Recombination events in deCODE Genetic Map (zoom to < 10kbp to see the events)

Recomb. deCODE Mat

Recombination rate: deCODE Genetics, maternal

Recomb. deCODE Pat

Recombination rate: deCODE Genetics, paternal

Recomb. deCODE Avg

Recombination rate: deCODE Genetics, average from paternal and maternal (mat for chrX)

RefSeq Acc

RefSeq Accession

Restr Enzymes

Restriction Enzymes from REBASE

Scaffolds

GRCh38 Defined Scaffold Identifiers

Short Match

Perfect Matches to Short Sequence ()

STS Markers

STS Markers on Genetic (blue) and Radiation Hybrid (black) Maps

Genes and Gene Predictions

GENCODE V44

NCBI RefSeq

RefSeq genes from NCBI

CCDS

Consensus CDS

CRISPR Targets

CRISPR/Cas9 -NGG Targets, whole genome

GENCODE Versions

Container of all new and previous GENCODE releases

GENCODE V20 (Ensembl 76)

Gene Annotations from GENCODE Version 20 (Ensembl 76)

All GENCODE V22

All GENCODE transcripts including comprehensive set V22

All GENCODE V23

All GENCODE transcripts including comprehensive set V23

All GENCODE V24

All GENCODE transcripts including comprehensive set V24

All GENCODE V25

All GENCODE transcripts including comprehensive set V25

All GENCODE V26

All GENCODE annotations from V26 (Ensembl 88)

All GENCODE V27

All GENCODE annotations from V27 (Ensembl 90)

All GENCODE V28

All GENCODE annotations from V28 (Ensembl 92)

All GENCODE V29

All GENCODE annotations from V29 (Ensembl 94)

All GENCODE V30

All GENCODE annotations from V30 (Ensembl 96)

All GENCODE V31

All GENCODE annotations from V31 (Ensembl 97)

All GENCODE V32

All GENCODE annotations from V32 (Ensembl 98)

All GENCODE V33

All GENCODE annotations from V33 (Ensembl 99)

All GENCODE V34

All GENCODE annotations from V34 (Ensembl 100)

All GENCODE V35

All GENCODE annotations from V35 (Ensembl 101)

All GENCODE V36

All GENCODE annotations from V36 (Ensembl 102)

All GENCODE V37

All GENCODE annotations from V37 (Ensembl 103)

All GENCODE V38

All GENCODE annotations from V38 (Ensembl 104)

All GENCODE V39

All GENCODE annotations from V39 (Ensembl 105)

All GENCODE V40

All GENCODE annotations from V40 (Ensembl 106)

All GENCODE V41

All GENCODE annotations from V41 (Ensembl 107)

All GENCODE V42

All GENCODE annotations from V42 (Ensembl 108)

All GENCODE V43

All GENCODE annotations from V43 (Ensembl 109)

All GENCODE V44

All GENCODE annotations from V44 (Ensembl 110)

All GENCODE V45

All GENCODE annotations from V45 (Ensembl 111)

HGNC

HUGO Gene Nomenclature

IKMC Genes Mapped

International Knockout Mouse Consortium Genes Mapped to Human Genome

LRG Transcripts

Locus Reference Genomic (LRG) / RefSeqGene Fixed Transcript Annotations

MANE

MANE Select Plus Clinical: Representative transcript from RefSeq & GENCODE

MGC/ORFeome Genes

MGC/ORFeome Full ORF mRNA Clones

ORFeome Clones

ORFeome Collaboration Gene Clones

MGC Genes

Mammalian Gene Collection Full ORF mRNAs

Non-coding RNA

RNA sequences that do not code for a protein

tRNA Genes

Transfer RNA Genes Identified with tRNAscan-SE

sno/miRNA

C/D and H/ACA Box snoRNAs, scaRNAs, and microRNAs from snoRNABase and miRBase

lincRNA TUCP

lincRNA and TUCP transcripts

lincRNA RNA-Seq

lincRNA RNA-Seq reads expression abundances

Old UCSC Genes

Previous Version of UCSC Genes

Other RefSeq

Non-Human RefSeq Genes

Pfam in GENCODE

Pfam Domains in GENCODE Genes

Prediction Archive

Gene Prediction Archive

SIB Genes

Swiss Institute of Bioinformatics Gene Predictions from mRNA and ESTs

SGP Genes

SGP Gene Predictions Using Mouse/Human Homology

Genscan Genes

Genscan Gene Predictions

Geneid Genes

Geneid Gene Predictions

AUGUSTUS

AUGUSTUS ab initio gene predictions v3.1

RetroGenes V9

Retroposed Genes V9, Including Pseudogenes

TransMap V5

TransMap Alignments Version 5

TransMap ESTs

TransMap EST Mappings Version 5

TransMap RNA

TransMap GenBank RNA Mappings Version 5

TransMap RefGene

TransMap RefSeq Gene Mappings Version 5

TransMap Ensembl

TransMap Ensembl and GENCODE Mappings Version 5

UCSC Alt Events

Alternative Splicing, Alternative Promoter and Similar Events in UCSC Genes

UniProt

UniProt SwissProt/TrEMBL Protein Annotations

Phenotype and Literature

COVID Rare Harmful Var

Rare variants underlying COVID-19 severity and susceptibility from the COVID Human Genetics Effort

new AbSplice Scores

Aberrant Splicing Prediction Scores

CADD

CADD 1.6 Score for all single-basepair mutations and selected insertions/deletions

Insertions

CADD 1.6 Score: Insertions - label is length of insertion

Deletions

CADD 1.6 Score: Deletions - label is length of deletion

CADD

CADD 1.6 Score for all possible single-basepair mutations (zoom in for scores)

Cancer Gene Expr

Gene Expression in 33 TCGA Cancer Tissues (GENCODE v23)

Cancer Transc Expr

Transcript-level Expression in 33 TCGA Cancer Tissues (GENCODE v23)

Cancer Gene Expr

Gene Expression in 33 TCGA Cancer Tissues (GENCODE v23)

ClinGen

ClinGen curation activities (Dosage Sensitivity and Gene-Disease Validity)

ClinGen CNVs

Clinical Genome Resource (ClinGen) CNVs

ClinVar Variants

Constraint scores

Human constraint scores

UKB Depl. Rank Score

UK Biobank / deCODE Genetics Depletion Rank Score

HMC

HMC - Homologous Missense Constraint Score on PFAM domains

JARVIS

JARVIS: score to prioritize non-coding regions for disease relevance

Coriell CNVs

Coriell Cell Line Copy Number Variants

DECIPHER CNVs

Development Delay

Copy Number Variation Morbidity Map of Developmental Delay

Dosage Sensitivity

pHaplo and pTriplo dosage sensitivity map from Collins et al 2022

GenCC

The Gene Curation Coalition Annotations

Gene Interactions

Protein Interactions from Curated Databases and Text-Mining

GeneReviews

GWAS Catalog

NHGRI-EBI Catalog of Published Genome-Wide Association Studies

HGMD public

Human Gene Mutation Database - Public Version Dec 2022

Orphanet

Orphadata: Aggregated Data From Orphanet

PanelApp

Genomics England PanelApp Diagnostics

REVEL Scores

REVEL Pathogenicity Score for single-base coding mutations (zoom for exact score)

SNPedia

TCGA Pan-Cancer

TCGA Pan-Cancer mutations: 33 TCGA Cancer Projects Summary (Pan-Can 33)

UniProt Variants

UniProt/SwissProt Amino Acid Substitutions

Variants in Papers

Genetic Variants mentioned in scientific publications

Mastermind Variants

Genomenon Mastermind Variants extracted from full text publications

Avada Variants

Avada Variants extracted from full text publications

Human Pangenome - HPRC

Multiple Alignment

Multiple Alignment on 90 human genome assemblies

Pairwise Alignments

Human Genomes, Chain/Net pairwise alignments, as mapped by the HPRC project

Rearrangements

Rearrangements including indels, inversions, and duplications

Short Variants

HPRC Variants > 3bp

HPRC VCF variants filtered for items size > 3bp

HPRC Variants <= 3bp

HPRC VCF variants filtered for items size <= 3bp

HPRC All Variants

HPRC variants decomposed from hprc-v1.0-mc.grch38.vcfbub.a100k.wave.vcf.gz (Liao et al 2023), no size filtering

Single Cell RNA-seq

Blood (PBMC) Hao

Peripheral blood mononuclear cells (PBMC) from Hao et al 2020

Blood PBMC Time

Blood PBMCs binned by time into experiment from Hao et al 2020

Blood PBMC Phase

Blood PBMCs binned by phase of cell cycle from Hao et al 2020

Blood PBMC Donor

Blood PBMCs binned by blood donor from Hao et al 2020

Blood PBMC Cells 3

Blood PBMCs binned by cell type (level 3) from Hao et al 2020

Blood PBMC Cells 2

Blood PBMCs binned by cell type (level 2) from Hao et al 2020

Blood PBMC Cells

Blood (PBMCs) binned by cell type (level 1) from Hao et al 2020

Colon Wang

Colon single cell sequencing from Wang et al 2020

Colon Donor

Colon cells binned by organ donor from Wang et al 2020

Colon Cells

Colon cells binned by cell type from Wang et al 2020

Cortex Velmeshev

Cerebral cortex single cell data from Velmeshev et al 2019

Cortex Sex

Cerebral cortex RNA binned by sex of donor from Velmeshev et al 2019

Cortex Sample

Cerebral cortex RNA binned by biosample from Velmeshev et al 2019

Cortex Donor

Cerebral cortex RNA binned by organ donor from Velmeshev et al 2019

Cortex Diagnosis

Cerebral cortex RNA binned by ASD/control diagnosis from Velmeshev et al 2019

Cortex Cells

Cerebral cortex RNA binned by cell type from Velmeshev et al 2019

Cross Tissue Nuclei

Single Nuclei sequenced across many tissues

GTEx Immune Atlas

GTEx single nuclei immune expression

Cross Tissue Details

Cross tissue nuclei full details

Cross Tissue Nuclei

Cross tissue nuclei RNA by tissue and cell type

Fetal Gene Atlas

Fetal Gene Atlas from Cao et al 2020

Fetal Sex

Fetal Gene Atlas binned by sex from Cao et al 2020

Fetal RT Group

Fetal Gene Atlas binned by RT group from Cao et al 2020

Fetal Organ

Fetal Gene Atlas binned by organ from Cao et al 2020

Fetal Lineage

Fetal Gene Atlas binned by cell lineage and organ from Cao et al 2020

Fetal Exp

Fetal Gene Atlas binned by experiment id from Cao et al 2020

Fetal Donor ID

Fetal Gene Atlas binned by donor ID from Cao et al 2020

Fetal Cells

Fetal Gene Atlas binned by cell type from Cao et al 2020

Fetal Assay

Fetal Gene Atlas binned by assay (cell/nucleus) from Cao et al 2020

Heart Cell Atlas

Heart single cell RNA data from https://heartcellatlas.com

Heart HCA Version

Heart cell RNA binned by 10x chemistry version from https://heartcellatlas.org

Heart HCA State

Heart cell RNA binned by cell state from https://heartcellatlas.org

Heart HCA Source

Heart cell RNA binned by source (nucleus vs whole cell) from https://heartcellatlas.org

Heart HCA Sex

Heart cell RNA binned by sex of donor from https://heartcellatlas.org

Heart HCA Sample

Heart cell RNA binned by biosample from https://heartcellatlas.org

Heart HCA Region

Heart cell RNA binned by region of collection from https://heartcellatlas.org

Heart HCA Donor

Heart cell RNA binned by organ donor from https://heartcellatlas.org

Heart HCA Cells

Heart cell RNA binned by cell type from https://heartcellatlas.org

Heart HCA Age

Heart cell RNA binned by age group of donor from https://heartcellatlas.org

Ileum Wang

Ileum single cell sequencing from Wang et al 2020

Ileum Donor

Ileum cells binned by organ donor from Wang et al 2020

Ileum Cells

Ileum cells binned by cell type from Wang et al 2020

Kidney Stewart

Kidney single cell data from Stewart et al 2019

Kidney Project

Kidney RNA binned by project from Stewart et al 2019

Kidney Experiment

Kidney RNA binned by Experiment from Stewart et al 2019

Kidney Details

Kidney RNA binned by detailed cell type from Stewart et al 2019

Kidney Compartment

Kidney RNA binned by compartment from Stewart et al 2019

Kidney Cells

Kidney RNA binned by merged cell type from Stewart et al 2019

Kidney Broad CT

Kidney RNA binned by broad cell type from Stewart et al 2019

Liver MacParland

Liver single cell sequencing from MacParland et al 2018

Liver Donor

Liver cells binned by organ donor from MacParland et al 2018

Liver Cells

Liver cells binned by cell type from MacParland et al 2018

Liver Broad

Liver cells binned by broad cell type from MacParland et al 2018

Lung Travaglini

Lung cells from from Travaglini et al 2020

Lung Sample FACS

Lung cells FACS method binned by sample from Travaglini et al 2020

Lung Sample

Lung cells 10x method binned by sample from Travaglini et al 2020

Lung Organ FACS

Lung cells FACS method binned by organ from Travaglini et al 2020

Lung Organ

Lung cells 10x method binned by organ from Travaglini et al 2020

Lung Mag Sel

Lung cells 10x method binned by magnetic.selection from Travaglini et al 2020

Lung Locat FACS

Lung cells FACS method binned by location from Travaglini et al 2020

Lung Locat

Lung cells 10x method binned by location from Travaglini et al 2020

Lung Label FACS

Lung cells FACS method binned by label from Travaglini et al 2020

Lung Half Det FACS

Lung cells FACS method binned by merged cell type from Travaglini et al 2020

Lung Half Det

Lung cells 10x method binned by halfway detailed cell type from Travaglini et al 2020

Lung Gating FACS

Lung cells FACS method binned by gating from Travaglini et al 2020

Lung Donor FACS

Lung cells FACS method binned by organ donor from Travaglini et al 2020

Lung Donor

Lung cells 10x method binned by organ donor from Travaglini et al 2020

Lung Detail FACS

Lung cells FACS method binned by detailed cell type from Travaglini et al 2020

Lung Detail

Lung cells 10x method binned by detailed cell type from Travaglini et al 2020

Lung Compart FACS

Lung cells FACS method binned by compartment from Travaglini et al 2020

Lung Compart

Lung cells 10x method binned by compartment from Travaglini et al 2020

Lung Cells FACS

Lung cells FACS method binned by merged cell type from Travaglini et al 2020

Lung Cells

Lung cells 10x method binned by merged cell type from Travaglini et al 2020

Merged Cells

Single cell RNA expression levels cell types from many organs

Muscle De Micheli

Muscle single cell data from De Micheli et al 2020

Muscle Sample

Muscle RNA binned by biosample from De Micheli et al 2020

Muscle Cells

Muscle RNA binned by cell type from De Micheli et al 2020

Pancreas Baron

Pancreas single cell sequencing from Baron et al 2016

Pancreas Donor

Pancreas cells binned by organ donor from Baron et al 2016

Pancreas Details

Pancreas cells binned by detailed cell type from Baron et al 2016

Pancreas Cells

Pancreas cells binned by cell type from Baron et al 2016

Pancreas Batch

Pancreas cells binned by batch from Baron et al 2016

Placenta Vento-Tormo

Placenta and decidua cells from from Vento-Tormo et al 2018

Placenta Stage

Placenta and decidua cells binned by placental stage 10x from Vento-Tormo et al 2018

Placenta Mat/Fet Ss2

Placenta and decidua cells binned by maternal/fetal smart-seq2 from Vento-Tormo et al 2018

Placenta Mat/Fet

Placenta and decidua cells binned by maternal/fetal 10x from Vento-Tormo et al 2018

Placenta Loc Ss2

Placenta and decidua cells binned by cell location smart-seq2 from Vento-Tormo et al 2018

Placenta Loc

Placenta and decidua cells binned by cell location 10x from Vento-Tormo et al 2018

Placenta Detail Ss2

Placenta and decidua cells binned by detailed cell type smart-seq2 from Vento-Tormo et al 2018

Placenta Detail

Placenta and decidua cells binned by detailed cell type 10x from Vento-Tormo et al 2018

Placenta Cells Ss2

Placenta and decidua cells binned by cell type smart-seq2 from Vento-Tormo et al 2018

Placenta Cells

Placenta and decidua cells binned by cell type 10x from Vento-Tormo et al 2018

Rectum Wang

Rectum single cell sequencing from Wang et al 2020

Rectum Donor

Rectum cells binned by organ donor from Wang et al 2020

Rectum Cells

Rectum cells binned by cell type from Wang et al 2020

Skin Sole-Boldo

Skin single cell data from Sole-Boldo et al 2020

Skin Donor

Skin single cell RNA binned by skin donor from Sole-Boldo et al 2020

Skin Cell+Age

Skin single cell RNA binned by cell type and donor's age from Sole-Boldo et all 2020

Skin Cell

Skin single cell RNA binned by cell type from Sole-Boldo et al 2020

Skin Age

Skin single cell RNA binned by skin donor's age from Sole-Boldo et al 2020

Tabula Sapiens

Tabula Sapiens single cell RNA data from many tissues

Tabula Tissue Cell

Tabula sapiens RNA by tissue and cell type

Tabula Details

Tabula sapiens full details view

mRNA and EST

Human ESTs

Human ESTs Including Unspliced

Human mRNAs

Human mRNAs from GenBank

Other ESTs

Non-Human ESTs from GenBank

Other mRNAs

Non-Human mRNAs from GenBank

SIB Alt-Splicing

Alternative Splicing Graph from Swiss Institute of Bioinformatics

Spliced ESTs

Human ESTs That Have Been Spliced

Expression

GTEx Gene V8

Gene Expression in 54 tissues from GTEx RNA-seq of 17382 samples, 948 donors (V8, Aug 2019)

GTEx RNA-Seq Coverage

GTEx V8 RNA-Seq Read Coverage by Tissue

Affy Archive

Affymetrix Archive

Affy U95

Alignments of Affymetrix Consensus/Exemplars from HG-U95

Affy U133

Alignments of Affymetrix Consensus/Exemplars from HG-U133

Affy GNF1H

Alignments of Affymetrix Consensus/Exemplars from GNF1H

EPDnew Promoters

Promoters from EPDnew

GNF Atlas 2

GNF Expression Atlas 2

GTEx Gene

Gene Expression in 53 tissues from GTEx RNA-seq of 8555 samples (570 donors)

GTEx Transcript

Transcript Expression in 53 tissues from GTEx RNA-seq of 8555 samples/570 donors

GWIPS-viz Riboseq

Ribosome Profiling from GWIPS-viz

miRNA Tissue Atlas

Tissue-Specific microRNA Expression from Two Individuals

Regulation

ENCODE cCREs

ENCODE Candidate Cis-Regulatory Elements (cCREs) combined from all cell types

ENCODE Regulation

Integrated Regulation from ENCODE

TF ChIP

Transcription Factor ChIP-seq Peaks (340 factors in 129 cell types) from ENCODE 3

TF Clusters

Transcription Factor ChIP-seq Clusters (340 factors, 129 cell types) from ENCODE 3

DNase HS

DNase I Hypersensitivity in 95 cell types from ENCODE

DNase Signal

DNase I Hypersensitivity Signal Colored by Similarity from ENCODE

DNase Clusters

DNase I Hypersensitivity Peak Clusters from ENCODE (95 cell types)

Layered H3K27Ac

H3K27Ac Mark (Often Found Near Regulatory Elements) on 7 cell lines from ENCODE

Layered H3K4Me3

H3K4Me3 Mark (Often Found Near Promoters) on 7 cell lines from ENCODE

Layered H3K4Me1

H3K4Me1 Mark (Often Found Near Regulatory Elements) on 7 cell lines from ENCODE

Transcription

Transcription Levels Assayed by RNA-seq on 9 Cell Lines from ENCODE

CpG Islands

CpG Islands (Islands < 300 Bases are Light Green)

Unmasked CpG

CpG Islands on All Sequence (Islands < 300 Bases are Light Green)

CpG Islands

CpG Islands (Islands < 300 Bases are Light Green)

new FANTOM5

FANTOM5: Mapped transcription start sites (TSS) and their usage

TSS activity (TPM)

FANTOM5: TSS activity per sample (TPM)

TSS activity - read counts

FANTOM5: TSS activity per sample read counts

Max counts of CAGE reads

FANTOM5: Max counts of CAGE reads

Total counts of CAGE reads

FANTOM5: Total counts of CAGE reads

TSS peaks

FANTOM5: DPI peak, robust set

GTEx cis-eQTLs

GTEx fine-mapped cis-eQTLs

Hi-C and Micro-C

Comparison of Micro-C and In situ Hi-C protocols in H1-hESC and HFFc6

updated JASPAR Transcription Factors

JASPAR Transcription Factor Binding Site Database

ORegAnno

Regulatory elements from ORegAnno

RefSeq Func Elems

NCBI RefSeq Functional Elements

ReMap ChIP-seq

ReMap Atlas of Regulatory Regions

VISTA Enhancers

Comparative Genomics

Conservation

Vertebrate Multiz Alignment & Conservation (100 Species)

Cactus 241-way

Cactus Alignment & Conservation of Zoonomia Placental Mammals (241 Species)

Cons 30 Primates

Mammals Multiz Alignment & Conservation (27 primates)

Primate Chain/Net

Primate Genomes, Chain and Net Alignments

Placental Chain/Net

Non-primate Placental Mammal Genomes, Chain and Net Alignments

Vertebrate Chain/Net

Non-placental Vertebrate Genomes, Chain and Net Alignments

Cactus 447-way

Cactus Alignment & Conservation on 447 mammal species, including Zoonomia genomes

CHM13 alignments

CHM13 (GCA_009914755.4) v1_nfLO liftOver alignments

Multiz 470-way

Multiz Alignment & Conservation (470 mammals)

Variation

dbSNP 155

Short Genetic Variants from dbSNP release 155

COVID GWAS v4

COVID risk variants from GWAS meta-analyses by the COVID-19 Host Genetics Initiative (Rel 4, Oct 2020)

COVID GWAS v3

GWAS meta-analyses from the COVID-19 Host Genetics Initiative

1000G Archive

1000 Genomes Archive

1000G Ph3 Vars

1000 Genomes Phase 3 Integrated Variant Calls from IGSR: SNVs and Indels

1000 Genomes Trios

Thousand Genomes Project Family VCF Trios

updated Array Probesets

Microarray Probesets

dbSNP Archive

dbSNP Track Archive

All SNPs(141)

Simple Nucleotide Polymorphisms (dbSNP 141)

Common SNPs(141)

Simple Nucleotide Polymorphisms (dbSNP 141) Found in >= 1% of Samples

Flagged SNPs(141)

Simple Nucleotide Polymorphisms (dbSNP 141) Flagged by dbSNP as Clinically Assoc

Mult. SNPs(141)

Simple Nucleotide Polymorphisms (dbSNP 141) That Map to Multiple Genomic Loci

All SNPs(142)

Simple Nucleotide Polymorphisms (dbSNP 142)

Common SNPs(142)

Simple Nucleotide Polymorphisms (dbSNP 142) Found in >= 1% of Samples

Flagged SNPs(142)

Simple Nucleotide Polymorphisms (dbSNP 142) Flagged by dbSNP as Clinically Assoc

Mult. SNPs(142)

Simple Nucleotide Polymorphisms (dbSNP 142) That Map to Multiple Genomic Loci

All SNPs(144)

Simple Nucleotide Polymorphisms (dbSNP 144)

Common SNPs(144)

Simple Nucleotide Polymorphisms (dbSNP 144) Found in >= 1% of Samples

Flagged SNPs(144)

Simple Nucleotide Polymorphisms (dbSNP 144) Flagged by dbSNP as Clinically Assoc

Mult. SNPs(144)

Simple Nucleotide Polymorphisms (dbSNP 144) That Map to Multiple Genomic Loci

All SNPs(146)

Simple Nucleotide Polymorphisms (dbSNP 146)

Common SNPs(146)

Simple Nucleotide Polymorphisms (dbSNP 146) Found in >= 1% of Samples

Flagged SNPs(146)

Simple Nucleotide Polymorphisms (dbSNP 146) Flagged by dbSNP as Clinically Assoc

Mult. SNPs(146)

Simple Nucleotide Polymorphisms (dbSNP 146) That Map to Multiple Genomic Loci

All SNPs(147)

Simple Nucleotide Polymorphisms (dbSNP 147)

Common SNPs(147)

Simple Nucleotide Polymorphisms (dbSNP 147) Found in >= 1% of Samples

Flagged SNPs(147)

Simple Nucleotide Polymorphisms (dbSNP 147) Flagged by dbSNP as Clinically Assoc

Mult. SNPs(147)

Simple Nucleotide Polymorphisms (dbSNP 147) That Map to Multiple Genomic Loci

Flagged SNPs(150)

Simple Nucleotide Polymorphisms (dbSNP 150) Flagged by dbSNP as Clinically Assoc

Common SNPs(150)

Simple Nucleotide Polymorphisms (dbSNP 150) Found in >= 1% of Samples

All SNPs(150)

Simple Nucleotide Polymorphisms (dbSNP 150)

Mult. SNPs(150)

Simple Nucleotide Polymorphisms (dbSNP 150) That Map to Multiple Genomic Loci

Mult. SNPs(151)

Simple Nucleotide Polymorphisms (dbSNP 151) That Map to Multiple Genomic Loci

Flagged SNPs(151)

Simple Nucleotide Polymorphisms (dbSNP 151) Flagged by dbSNP as Clinically Assoc

All SNPs(151)

Simple Nucleotide Polymorphisms (dbSNP 151)

Common SNPs(151)

Simple Nucleotide Polymorphisms (dbSNP 151) Found in >= 1% of Samples

dbSNP 153

Short Genetic Variants from dbSNP release 153

dbVar Common Struct Var

NCBI Curated Common Structural Variants from dbVar

dbVar Conflict SV

NCBI dbVar Curated Conflict Variants

dbVar Common SV

NCBI dbVar Curated Common Structural Variants

DGV Struct Var

Database of Genomic Variants: Structural Variation (CNV, Inversion, In/del)

Genome In a Bottle

Genome In a Bottle Structural Variants and Trios

updated gnomAD Variants

Genome Aggregation Database (gnomAD) Genome and Exome Variants

new gnomAD Constraint Metrics

Genome Aggregation Database (gnomAD) Predicted Constraint Metrics (pLI and Z-scores)

gnomAD Mut Constraint

Genome Aggregation Database (gnomAD) non-coding constraint of haploinsufficient variation (Gnocchi), includes chrX

gnomAD v2

Genome Aggregation Database (gnomAD) Genome and Exome Variants v2.1

gnomAD v3

Genome Aggregation Database (gnomAD) Genome Variants v3

updated gnomAD v3.1.1

Genome Aggregation Database (gnomAD) Genome Variants v3.1.1

gnomAD v3.1

Genome Aggregation Database (gnomAD) Genome Variants v3.1

gnomAD v4 Pre-Release

Genome Aggregation Database (gnomAD) Genome Variants v4.0.0 Pre-Release

Platinum Genomes

Platinum genome variants

Repeats

RepeatMasker

Repeating Elements by RepeatMasker

Interrupted Rpts

Fragments of Interrupted Repeats Joined by RepeatMasker ID

Microsatellite

Microsatellites - Di-nucleotide and Tri-nucleotide Repeats

RepeatMasker Viz.

Detailed Visualization of RepeatMasker Annotations

Segmental Dups

Duplications of >1000 Bases of Non-RepeatMasked Sequence

Self Chain

Human Chained Self Alignments

Simple Repeats

Simple Tandem Repeats by TRF

WM + SDust

Genomic Intervals Masked by WindowMasker + SDust