bAgeTri1.0.p Apr. 2022 hub_67_GCA_023055355.1 JALJCS010000001.1:37,967,197-37,977,197 UCSC Genome Browser v504

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Skip to main content UCSC Genome Browser on bAgeTri1.0.p Apr. 2022 tricolored blackbird (1412-34295 primary hap 2022) (GCA_023055355.1)
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JALJCS010000001.1:37,967,197-37,977,197 10,001 bp.

Examples

Visible Tracks

CpG Islands

Hub: Invertebrate assemblies

Track hub error : badly formed url https:/hgdownload.soe.ucsc.edu/hubs/invertebrate/hub.txt, expected :// after the protocol

Hub: VGP primary

Track hub error : badly formed url https:/hgdownload.soe.ucsc.edu/hubs/VGP/groups.txt, expected :// after the protocol

Hub: Bird Alignment (363 species)

Track hub error : badly formed url https:/cgl.gi.ucsc.edu/data/cactus/363-avian-2020-hub/hub.txt, expected :// after the protocol

Hub: Fungi assemblies

Track hub error : badly formed url https:/hgdownload.soe.ucsc.edu/hubs/GCF/000/184/455/GCF_000184455.2/trackDb.txt, expected :// after the protocol

Hub: Exp/Meth VNTR hub

Track hub error : badly formed url https:/raw.githubusercontent.com/AndyMSSMLab/UCSC_exp_meth_VNTR/main/hub.txt, expected :// after the protocol

Mapping and Sequencing

Tandem Dups

Genes and Gene Predictions

Augustus

mRNA and EST

RefSeq mRNAs

Expression and Regulation

CpG Islands

Variation and Repeats

RepeatMasker

Simple Repeats

WM + SDust

left 10%	ctrl+j	track search	t then s
left 1/2 screen	j	default tracks	d then t
left one screen	J	default order	d then o
right 10%	ctrl+l	hide all	h then a
right 1/2 screen	l	custom tracks	c then t
right one screen	L	track collections	t then c
jump to position box	/	track hubs	t then h
zoom in 1.5x	ctrl+i	configure	c then f
zoom in 3x	i	reverse	r then v
zoom in 10x	I	resize	r then s
zoom in base level	b	refresh	r then f
zoom out 1.5x	ctrl+k	view chrom names	v then s
zoom out 3x	k	send to external tool	s then t
zoom out 10x	K	exon view	e then v
zoom out 100x	0	default view	d then v
zoom to ...		view DNA	v then d
50bp (1 zero)	1	Reset all User Settings	c then r
500bp (2 zeros)	2	Tools - BLAT	t then b
5000bp (3 zeros)	3	Tools - Table Browser	t then t
50kbp (4 zeros)	4	Tools - PCR	t then i
500kbp (5 zeros)	5	My Sessions	s then s
5Mbp (6 zeros)	6	Public Sessions	p then s
highlight all (mark)	h then m	clear all Highlights	h then c
quick connect hub	c then h