fEucNew1.0.hap2 Nov. 2022 hub_72_GCA_026437355.1 JAPEHP010000001.1:17,884,109-17,894,109 UCSC Genome Browser v504

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Skip to main content UCSC Genome Browser on fEucNew1.0.hap2 Nov. 2022 tidewater goby (DKJ021-1_F 2022) (GCA_026437355.1)
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JAPEHP010000001.1:17,884,109-17,894,109 10,001 bp.

Examples

Visible Tracks

CpG Islands

Hub: Fungi assemblies

Track hub error : Error in TCP non-blocking connect() 111 - Connection refused. Host hgdownload.soe.ucsc.edu IP 128.114.119.163 port 443. netConnect() failed Error in TCP non-blocking connect() 111 - Connection refused. Host hgdownload.soe.ucsc.edu IP 128.114.119.163 port 443. netConnect() failed Couldn't open https://hgdownload.soe.ucsc.edu/hubs/GCF/011/075/155/GCF_011075155.1/trackDb.txt

Hub: Mammal and Bird Alignment (605 species)

Track hub error : badly formed url https:/cgl.gi.ucsc.edu/data/cactus/605-vertebrate-2020-hub/Panthera_onca/trackDb.txt, expected :// after the protocol

Hub: Bird Alignment (363 species)

Track hub error : badly formed url https:/cgl.gi.ucsc.edu/data/cactus/363-avian-2020-hub/hub.txt, expected :// after the protocol

Hub: Exp/Meth VNTR hub

Track hub error : badly formed url https:/raw.githubusercontent.com/AndyMSSMLab/UCSC_exp_meth_VNTR/main/hub.txt, expected :// after the protocol

Mapping and Sequencing

Base Position

All Gaps

Assembly

Chromosome Band (Ideogram)

GC Percent

Restr Enzymes

Short Match

Tandem Dups

Genes and Gene Predictions

Augustus

RNA and Transcriptome

RefSeq mRNAs

Expression and Regulation

CpG Islands

Comparative Genomics

tidewater goby Chain/Net

Variation and Repeats

RepeatMasker

Simple Repeats

WM + SDust

left 10%	ctrl+j	track search	t then s
left 1/2 screen	j	default tracks	d then t
left one screen	J	default order	d then o
right 10%	ctrl+l	hide all	h then a
right 1/2 screen	l	custom tracks	c then t
right one screen	L	track collections	t then c
jump to position box	/	track hubs	t then h
zoom in 1.5x	ctrl+i	configure	c then f
zoom in 3x	i	reverse	r then v
zoom in 10x	I	resize	r then s
zoom in base level	b	refresh	r then f
zoom out 1.5x	ctrl+k	view chrom names	v then s
zoom out 3x	k	send to external tool	s then t
zoom out 10x	K	exon view	e then v
zoom out 100x	0	default view	d then v
zoom to ...		view DNA	v then d
50bp (1 zero)	1	Reset all User Settings	c then r
500bp (2 zeros)	2	Tools - BLAT	t then b
5000bp (3 zeros)	3	Tools - Table Browser	t then t
50kbp (4 zeros)	4	Tools - PCR	t then i
500kbp (5 zeros)	5	My Sessions	s then s
5Mbp (6 zeros)	6	Public Sessions	p then s
highlight all (mark)	h then m	clear all Highlights	h then c
quick connect hub	c then h