aSpeHam1.0.hap2 Mar. 2023 hub_78_GCA_029215755.1 JARDYJ010000001.1:62,668,599-62,678,599 UCSC Genome Browser v504

JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

Skip to main content UCSC Genome Browser on aSpeHam1.0.hap2 Mar. 2023 western spadefoot toad (hap2 HBS 135690 2023) (GCA_029215755.1)
Move Zoom in Zoom out

JARDYJ010000001.1:62,668,599-62,678,599 10,001 bp.

Examples

Visible Tracks

CpG Islands

Hub: EyeBrowse

Track hub error : badly formed url https:/hpc.nih.gov/eyebrowse/hub.txt, expected :// after the protocol

Hub: Primate assemblies

Track hub error : badly formed url https:/hgdownload.soe.ucsc.edu/hubs/primates/hub.txt, expected :// after the protocol

Hub: Invertebrate assemblies

Track hub error : badly formed url https:/hgdownload.soe.ucsc.edu/hubs/GCA/023/053/545/GCA_023053545.1/trackDb.txt, expected :// after the protocol

Hub: Mammal and Bird Alignment (605 species)

Track hub error : badly formed url https:/cgl.gi.ucsc.edu/data/cactus/605-vertebrate-2020-hub/Dyaphorophyia_castanea/trackDb.txt, expected :// after the protocol

Hub: Bird Alignment (363 species)

Track hub error : badly formed url https:/cgl.gi.ucsc.edu/data/cactus/363-avian-2020-hub/Apteryx_haastii/trackDb.txt, expected :// after the protocol

Hub: Fish assemblies

Track hub error : badly formed url https:/hgdownload.soe.ucsc.edu/hubs/fish/genomes.txt, expected :// after the protocol

Hub: Bird assemblies

Track hub error : badly formed url https:/hgdownload.soe.ucsc.edu/hubs/GCA/963/989/345/GCA_963989345.1/trackDb.txt, expected :// after the protocol

Hub: Fungi assemblies

Track hub error : badly formed url https:/hgdownload.soe.ucsc.edu/hubs/fungi/genomes.txt, expected :// after the protocol

Hub: Vertebrate assemblies

Track hub error : badly formed url https:/hgdownload.soe.ucsc.edu/hubs/GCA/028/017/845/GCA_028017845.1/trackDb.txt, expected :// after the protocol

Hub: Exp/Meth VNTR hub

Track hub error : badly formed url https:/raw.githubusercontent.com/AndyMSSMLab/UCSC_exp_meth_VNTR/main/hub.txt, expected :// after the protocol

Mapping and Sequencing

Tandem Dups

Genes and Gene Predictions

Augustus

RNA and Transcriptome

RefSeq mRNAs

Expression and Regulation

CpG Islands

Variation and Repeats

RepeatMasker

Simple Repeats

WM + SDust

left 10%	ctrl+j	track search	t then s
left 1/2 screen	j	default tracks	d then t
left one screen	J	default order	d then o
right 10%	ctrl+l	hide all	h then a
right 1/2 screen	l	custom tracks	c then t
right one screen	L	track collections	t then c
jump to position box	/	track hubs	t then h
zoom in 1.5x	ctrl+i	configure	c then f
zoom in 3x	i	reverse	r then v
zoom in 10x	I	resize	r then s
zoom in base level	b	refresh	r then f
zoom out 1.5x	ctrl+k	view chrom names	v then s
zoom out 3x	k	send to external tool	s then t
zoom out 10x	K	exon view	e then v
zoom out 100x	0	default view	d then v
zoom to ...		view DNA	v then d
50bp (1 zero)	1	Reset all User Settings	c then r
500bp (2 zeros)	2	Tools - BLAT	t then b
5000bp (3 zeros)	3	Tools - Table Browser	t then t
50kbp (4 zeros)	4	Tools - PCR	t then i
500kbp (5 zeros)	5	My Sessions	s then s
5Mbp (6 zeros)	6	Public Sessions	p then s
highlight all (mark)	h then m	clear all Highlights	h then c
quick connect hub	c then h