HG02630.alt.pat.f1_v2 May 2021 hub_77_GCA_018469945.1 JAHAOQ010000027.1:25,636,005-25,646,005 UCSC Genome Browser v504

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Skip to main content UCSC Genome Browser on HG02630.alt.pat.f1_v2 May 2021 human (HG02630.pat 2021) (GCA_018469945.1)
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JAHAOQ010000027.1:25,636,005-25,646,005 10,001 bp.

Examples

Visible Tracks

CpG Islands

Hub: EyeBrowse

Track hub error : badly formed url https:/hpc.nih.gov/eyebrowse/hub.txt, expected :// after the protocol

Hub: EPD Viewer Hub

Track hub error : badly formed url https:/epd.expasy.org/epd/ucsc/epdHub/epdHub.txt, expected :// after the protocol

Hub: VGP primary

Track hub error : badly formed url https:/hgdownload.soe.ucsc.edu/hubs/VGP/hub.txt, expected :// after the protocol

Hub: Bird Alignment (363 species)

Track hub error : badly formed url https:/cgl.gi.ucsc.edu/data/cactus/363-avian-2020-hub/Orthonyx_spaldingii/trackDb.txt, expected :// after the protocol

Hub: CCGP

Track hub error : badly formed url https:/hgdownload.soe.ucsc.edu/hubs/CCGP/hub.txt, expected :// after the protocol

Hub: Bird assemblies

Track hub error : badly formed url https:/hgdownload.soe.ucsc.edu/hubs/GCA/963/662/255/GCA_963662255.1/trackDb.txt, expected :// after the protocol

Hub: Fungi assemblies

Track hub error : badly formed url https:/hgdownload.soe.ucsc.edu/hubs/GCF/022/984/875/GCF_022984875.1/trackDb.txt, expected :// after the protocol

Hub: MethBase2

Track hub error : badly formed url http:/smithlab.usc.edu/trackdata/methylation/hub.txt, expected :// after the protocol

Hub: Exp/Meth VNTR hub

Track hub error : badly formed url https:/raw.githubusercontent.com/AndyMSSMLab/UCSC_exp_meth_VNTR/main/hub.txt, expected :// after the protocol

Mapping and Sequencing

Tandem Dups

Genes and Gene Predictions

Ensembl genes

Augustus

Ensembl 2022_08

RNA and Transcriptome

RefSeq mRNAs

Expression and Regulation

CpG Islands

Comparative Genomics

Human Chain/Net

Variation and Repeats

RepeatMasker

Simple Repeats

WM + SDust

left 10%	ctrl+j	track search	t then s
left 1/2 screen	j	default tracks	d then t
left one screen	J	default order	d then o
right 10%	ctrl+l	hide all	h then a
right 1/2 screen	l	custom tracks	c then t
right one screen	L	track collections	t then c
jump to position box	/	track hubs	t then h
zoom in 1.5x	ctrl+i	configure	c then f
zoom in 3x	i	reverse	r then v
zoom in 10x	I	resize	r then s
zoom in base level	b	refresh	r then f
zoom out 1.5x	ctrl+k	view chrom names	v then s
zoom out 3x	k	send to external tool	s then t
zoom out 10x	K	exon view	e then v
zoom out 100x	0	default view	d then v
zoom to ...		view DNA	v then d
50bp (1 zero)	1	Reset all User Settings	c then r
500bp (2 zeros)	2	Tools - BLAT	t then b
5000bp (3 zeros)	3	Tools - Table Browser	t then t
50kbp (4 zeros)	4	Tools - PCR	t then i
500kbp (5 zeros)	5	My Sessions	s then s
5Mbp (6 zeros)	6	Public Sessions	p then s
highlight all (mark)	h then m	clear all Highlights	h then c
quick connect hub	c then h