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Cactus 241-way Track Settings
 
Cactus Alignment & Conservation of Zoonomia Placental Mammals (241 Species)   (All Comparative Genomics tracks)

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Cactus Alignments ▾       Basewise Conservation (phyloP) ▾      
 
Cactus Alignments Configuration

Species selection:  + - default

  Primate  + -

chimpanzee
 pygmy chimpanzee
 western gorilla
 Sumatran orangutan
 gibbon
crab-eating macaque
 Rhesus monkey
 olive baboon
 pig-tailed macaque
 drill
proboscis monkey
 red guenon
 De Brazza's monkey
 green monkey
 Hanuman langur
golden snub-nosed monkey
 black snub-nosed monkey
 red shanked douc langur
 angolan colobus
 Ugandan red Colobus
sooty mangabey
 white-faced saki
 black-handed spider monkey
 Ma's night monkey
 white-eared titi monkey
mantled howler monkey
 white-fronted capuchin
 white-faced sapajou
 tamarin
 squirrel monkey
white-tufted-ear marmoset
 aye-aye
 ring-tailed lemur
 brown lemur
 Sclater's lemur
Coquerel's sifaka
 babakoto
 lesser dwarf lemur
 Coquerel's giant mouse lemur
 gray mouse lemur
slow loris
 bushbaby

  Carnivore  + -

Hawaiian monk seal
 Weddell seal
 northern elephant seal
 pacific walrus
 California sea lion
polar bear
 giant panda
 tiger
 jaguar
 leopard
cheetah
 puma
 black-footed cat
 fossa
 domestic cat
red panda
 African hunting dog
 dog
 wolf
 Arctic fox
striped hyena
 Asian palm civet
 ratel
 sea otter
 giant otter
dwarf mongoose
 banded mongoose
 western spotted skunk
 meerkat
 European polecat

  Cetartiodactyla  + -

North Pacific right whale
 grey whale
 Antarctic minke whale
 Minke whale
 Cuvier's beaked whale
narwhal
 beluga whale
 Sowerby's beaked whale
 killer whale
 Yangtze River dolphin
common bottlenose dolphin
 narrow-ridged finless porpoise
 harbor porpoise
 Ganges River dolphin
 boutu
pygmy sperm whale
 hippopotamus
 Arabian camel
 wild Bactrian camel
 Bactrian camel
alpaca
 pig
 Masai giraffe
 okapi
 Pere David's deer
Chacoan peccary
 water buffalo
 reindeer
 white-tailed deer
 American bison
bosMut1
 zebu cattle
 cow
 Siberian musk deer
 chiru
hirola
 bighorn sheep
 sheep
 pronghorn
 Nilgiri tahr
aoudad
 goat
 wild goat
 Saiga antelope
 Java mouse-deer

  Chiroptera  + -

great roundleaf bat
 Chinese rufous horseshoe bat
 black flying-fox
 large flying fox
 Brazilian free-tailed bat
Cantor's roundleaf bat
 eidHel1
 Schreibers' long-fingered bat
 Natal long-fingered bat
 long-tongued fruit bat
Egyptian rousette
 big brown bat
 myoBra1
 little brown bat
 greater mouse-eared bat
david's myotis (bat)
 Antillean ghost-faced bat
 Indian false vampire
 ptePar1
 common vampire bat
hog-nosed bat
 tailed tailless bat
 Fea's tube-nosed bat
 stripe-headed round-eared bat
 Seba's short-tailed bat
common pipistrelle
 hairy big-eared bat
 greater bulldog bat
 red bat
 Jamaican fruit-eating bat

  Rodents  + -

fat dormouse
 woodland dormouse
 South African ground squirrel
 Daurian ground squirrel
 American beaver
squirrel
 mountain beaver
 Alpine marmot
 crested porcupine
 naked mole-rat
hazel dormouse
 lowland paca
 chinchilla
 punctate agouti
 fukDam1
northern gundi
 pacarana
 Patagonian cavy
 capybara
 Montane guinea pig
domestic guinea pig
 cavApe1
 dipOrd2
 Stephens's kangaroo rat
 Upper Galilee mountains blind mole rat
greater cane rat
 degu
 Gobi jerboa
 dassie-rat
 little pocket mouse
meadow jumping mouse
 lesser Egyptian jerboa
 social tuco-tuco
 Desmarest's hutia
 nutria
Gambian giant pouched rat
 deer mouse
 southern grasshopper mouse
 Chinese hamster
 northern mole vole
golden hamster
 Transcaucasian mole vole
 fat sand rat
 Mongolian gerbil
 prairie vole
muskrat
 Egyptian spiny mouse
 hispid cotton rat
 house mouse
 Ryukyu mouse
western wild mouse
 shrew mouse
 Norway rat

  Mammals  + -

Sunda flying lemur
 northern white rhinoceros
 white rhinoceros
 black rhinoceros
 Sumatran rhinoceros
Asiatic tapir
 Brazilian tapir
 ass
 Przewalski's horse
 horse
large tree shrew
 chinese tree shrew
 West Indian manatee
 African savanna elephant
 Chinese pangolin
Malayan pangolin
 southern two-toed sloth
 Hoffmann's two-fingered sloth
 placentals
 screaming hairy armadillo
rabbit
 snowshoe hare
 aardvark
 nine-banded armadillo
 giant anteater
southern tamandua
 Hispaniolan solenodon
 eastern mole
 Cape rock hyrax
 yellow-spotted hyrax
Cape golden mole
 gracile shrew mole
 star-nosed mole
 American pika
 small Madagascar hedgehog
cape elephant shrew
 western European hedgehog
 shrew
 Talazac's shrew tenrec
 Indochinese shrew

Multiple alignment base-level:
Display bases identical to reference as dots
Display chains between alignments

Codon Translation:
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No codon translation
Use default species reading frames for translation
Use reading frames for species if available, otherwise no translation
Use reading frames for species if available, otherwise use default species
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 Basewise Cons  PhyloP Basewise Conservation of Zoonomia 241 Placental Mammals   Data format 
 
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 Cactus Align  Cactus Alignments of Zoonomia 241 Placental Mammals   Data format