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Fix Patches Track Settings
 
Reference Assembly Fix Patch Sequence Alignments   (All Mapping and Sequencing tracks)

Display mode:      Duplicate track

Color track by bases: Help on base coloring

Alignment Gap/Insertion Display Options Help on display options
Draw double horizontal lines when both genome and query have an insertion
Draw a vertical purple line for an insertion at the beginning or end of the
query, orange for insertion in the middle of the query
Draw a vertical green line where query has a polyA tail insertion


Display data as a density graph:

Display data as a rearrangement graph: